Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04893 ATGGAATCGAAAAACCCTGCAAGGTTTACGCTGGGGAAGCAGTCATCGCTGGCTCCAGAACGGCACAGTGAAGAACAGGAGCTTCACGACGATGGGGACGCTATTGATCCGGGAGTGAGGCTGATGTATTCGGCCAATGAAGGCGATGTGGATGGTATCCGTGAGGTGTTGGAGTTGGGTGTGAGTGTGAATTTCAGAGATATTGATGGCCGCACTGCTCTTCATGTTGCAGCGTGTCAGGGCTTAACTGATGTGGTTGCTTTGTTGCTCGAGAAAGGTGCTGAGGTCGACCCTAAAGATCGATGGGGCAGCACGCCACTTGCTGATGCTATATTTTATAAAAACAATGATGTGATCAAACTATTGGAGAAGCATGGAGCAAGGCCTCTGATGGCCCCGATGCATGTTAAGCATGCACGTGAAGTCCCAGAATATGAAATCAATCCTAAAGAACTTGATTTTACCAACAGTGTGGAGATAACAAAGGGGACTTTCTGTAGCGCGTTATGGCGTGGGACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTGATTAGTGATGAGGAGAAAGTGAAAGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTAGTCCAATTTCTGGGTGCTGTGACACAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCTTGAAAAGAAAAGGAGCTTTGAAACCAAGTACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCGGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAATTGCTGGCAGTTAAAGAAGACAGGCCTCTAACTTGCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTCAAGCAAGAAGAATATGACACCAAAGTGGATGTGTTCTCATTTGCACTGATTCTGCAAGAGATGATTGAAGGCTGTCCTCCTTTCTCTGCAAAGAATGAAGATGAGGTTCCTAAAGTATATGCTGCAAAAGAGCGGCCGCCTTTCCGAGCTCCAGCCAAGCGTTATTCGCATGGACTTCGAGAATTGATTGAAGAGTGCTGGCATGAGAATCCAGCAAAGAGGCCAACATTTAGGCAAATAATAACAAGGCTGGAGTCAATCTACAACACAATTGGTCAAAGAGGACGTTGGAAGGTTAATACTTCTCTCACATCCCCCTCCCGCCCCTGA 1299 0.4619 MESKNPARFTLGKQSSLAPERHSEEQELHDDGDAIDPGVRLMYSANEGDVDGIREVLELGVSVNFRDIDGRTALHVAACQGLTDVVALLLEKGAEVDPKDRWGSTPLADAIFYKNNDVIKLLEKHGARPLMAPMHVKHAREVPEYEINPKELDFTNSVEITKGTFCSALWRGTEVAVKKLGEDVISDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKNEDEVPKVYAAKERPPFRAPAKRYSHGLRELIEECWHENPAKRPTFRQIITRLESIYNTIGQRGRWKVNTSLTSPSRP. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04893 432 SMART ANK_2a 102 131 IPR002110 GO:0005515
Seca5g04893 432 SMART ANK_2a 69 98 IPR002110 GO:0005515
Seca5g04893 432 FunFam Integrin-linked protein kinase family 19 145 - -
Seca5g04893 432 SUPERFAMILY Ankyrin repeat 40 130 IPR036770 -
Seca5g04893 432 FunFam serine/threonine-protein kinase STY46-like 147 230 - -
Seca5g04893 432 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 145 412 - -
Seca5g04893 432 ProSiteProfiles Protein kinase domain profile. 119 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04893 432 PIRSF ILK 1 427 - -
Seca5g04893 432 Pfam Protein tyrosine and serine/threonine kinase 170 407 IPR001245 GO:0004672|GO:0006468
Seca5g04893 432 SUPERFAMILY Protein kinase-like (PK-like) 158 408 IPR011009 -
Seca5g04893 432 CDD STKc_MAP3K-like 160 407 - -
Seca5g04893 432 MobiDBLite consensus disorder prediction 18 35 - -
Seca5g04893 432 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Seca5g04893 432 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Seca5g04893 432 Gene3D - 7 144 IPR036770 -
Seca5g04893 432 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Seca5g04893 432 FunFam Os01g0748600 protein 140 426 - -
Seca5g04893 432 Gene3D Transferase(Phosphotransferase) domain 1 230 426 - -
Seca5g04893 432 PRINTS Tyrosine kinase catalytic domain signature 378 400 IPR001245 GO:0004672|GO:0006468
Seca5g04893 432 PRINTS Tyrosine kinase catalytic domain signature 265 283 IPR001245 GO:0004672|GO:0006468
Seca5g04893 432 PRINTS Tyrosine kinase catalytic domain signature 226 239 IPR001245 GO:0004672|GO:0006468
Seca5g04893 432 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Seca5g04893 432 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04893 Seca-Chr5 106254869 106262082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04893 8 427 MAP Kinase Kinase Kinase AT4G18950 70.824 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Seca5g04893 PK_Tyr_Ser-Thr 6.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04893 - - gmx:100790126 791.571