Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04892 ATGGCTTTCCCAAACCAATCCATGTCAGATTCTCCACAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACAAATCGCCAAGTCACCTTTTGCAAGCGCAGAAATGGCCTGCTCAAGAAAGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCTAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTCAAAACAACTATTGAGAGGTACAAGAAAGCATGCTCAGATTCATCTGGCGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGACAAACTGCGTGTGCAAATTAGTAACCTGCAGAACAACAACAGGCAAATGATGGGTGAGGCTTTGGGCTCTATGAATGCCAAGGAACTAAAAAACCTGGAGACAAAATTGGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGAACGAGCTGTTATTTGCTGAAATTGAGTACATGCAGAAGAGGAATGTACACTTTCAGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACCATAACCATAACATGAGCGTGTTGCCTGGAGGTACAAATTATGAGTCTGAGCAGCAGCAATTCGATTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCAAATCAAAATCAGTATGCTCCACGGCAAGACCAGATGTCCCTTCAATTAGTGTAA 750 0.4373 MAFPNQSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKTTIERYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGEALGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKRNVHFQEIDLHNNNQLLRAKIAESERSHHNHNMSVLPGGTNYESEQQQFDSRGYFQVTGLQPNQNQYAPRQDQMSLQLV. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04892 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 200 - -
Seca5g04892 249 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g04892 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Seca5g04892 249 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Seca5g04892 249 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 ProSiteProfiles K-box domain profile. 102 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g04892 249 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 Coils Coil 139 159 - -
Seca5g04892 249 Coils Coil 102 129 - -
Seca5g04892 249 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 Pfam K-box region 100 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g04892 249 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Seca5g04892 249 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Seca5g04892 249 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04892 Seca-Chr5 106223308 106230313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04892 14 249 MADS-box Gene Family AT3G58780 66.942 6.84e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca5g04892 K-box 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04892 K09264 - gmx:732595 404.831