Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04880 ATGGTTGTGGAAGATACCCCAAAATCTAGCATCACCGACGACCAAATCAGCAACAACCCTAGGGTTCTCGACGATAACGACGACCTCGAGGAAGGAGAGATCCTCAACGATGACGACTCCTCCGCCATTTCCAAGCCTCCCTCCGCCGTCGTCCGCCAACCCCATCCCCTCGAGAATTCATGGACCTTCTGGTTCGATAACCCTTCCGCCAAATCCAAGCAAGCCGCTTGGGGCAGCTCTATCCGACCCATCTACACCTTCGCCACCGTCGAGGAGTTTTGGAGCATTTACAATAACATACACCATCCCAGCAAGTTGGCTGTGGGAGCAGATTTTCATTGTTTCAAGCATAAAATTGAGCCGAAGTGGGAGGACCCAATCTGCGCTAATGGTGGGAAATGGACTATGACCTTTTCTAAGGGGAAATCTGATACCAGTTGGTTATATACGTTGTTGGCAATGATTGGAGAACAATTTGATCACGGAGATGAGATTTGCGGAGCAGTAGTGAATGTCAGAAATAGGCAGGAGAAAATTGCTCTTTGGACTAAGAATGCTTCAAATGAAGCTGCTCAGGTGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTATAATGACACAATTGGCTTTATATTTCATGAGGATGCAAAGAAGCTTGACAGAGGTGCTAAAAATAAATACGTCATATGA 693 0.4661 MVVEDTPKSSITDDQISNNPRVLDDNDDLEEGEILNDDDSSAISKPPSAVVRQPHPLENSWTFWFDNPSAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPICANGGKWTMTFSKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRQEKIALWTKNASNEAAQVSIGKQWKEFLDYNDTIGFIFHEDAKKLDRGAKNKYVI. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04880 230 Gene3D RNA Cap, Translation Initiation Factor Eif4e 48 230 IPR023398 -
Seca5g04880 230 MobiDBLite consensus disorder prediction 1 47 - -
Seca5g04880 230 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 30 218 IPR001040 GO:0003723|GO:0003743|GO:0006413
Seca5g04880 230 SUPERFAMILY eIF4e-like 44 226 IPR023398 -
Seca5g04880 230 Pfam Eukaryotic initiation factor 4E 56 207 IPR001040 GO:0003723|GO:0003743|GO:0006413
Seca5g04880 230 FunFam Eukaryotic translation initiation factor 4E 47 230 - -
Seca5g04880 230 ProSitePatterns Eukaryotic initiation factor 4E signature. 111 134 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04880 Seca-Chr5 106104517 106106676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04880 1 229 Eukaryotic Initiation Factors Gene Family AT4G18040 70.513 6.26e-116 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04880 K03259 - gmx:100793288 427.943