Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04877 ATGGCACACAACACTAGTGAGGTGCCGCCTCCACAACCTCAAGATCATGAAAAAGTTACCAACAACCAGAAAGTTCCATTCTACAAGCTTTTCACTTTTGCTGATCGCCTTGACGTGACGTTGATGATCATTGGCACCATTTGTGCCATGGCAAATGGCTTATCGCAACCTCTCATGACCCTCATTCTTGGGAAGCTCATCAACGCCTTTGGCTCCAACGTTCCATCCCAAGTTGTTCATCAAGTTTCTAAGGTTGCACTATTATTTGTTTATTTGGGAGTTGGGTCAGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCACACGAATCCGTGGCTTGTACTTGAAAACTATATTAAAACAAGACATTGCTTTCTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGACACTATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAACCTTTTTTGGTGGCTTTGTGATTGCCTTTGTAAAAGGATGGCAACTCGCTCTAGTTTTGCTTTCATGTATACCATTGGTTATCATTGCTGGTGGATTCATGTCTGTGTTGATGTCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAATAGTGGGAGCCATTAGAACAGTTGCATCTTTTACTGGCGAGAAAAAAGCAATAGAAAAGTATAATATAAAGTTAAAAGTTGCTTACACTACAATGGTTCAACAAGGGATGGTCTCAGGGCTAGGAATGGGAGTGCTTATGTTGATTATCTTTTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAACTGGTCATTGAAAAAGGATACATTGGTGGAACTGTCATAACTGTAATTGTAGCTCTTATGACTGGAGGAATGTCACTGGGTCAGGCATCCCCATGTGTAAATGCATTTGCTACAGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCTAAAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATAAAGGGAGATATTGAGCTTAAAGATGTTCACTTCACATACCCTGCAAGACCAGATGTGCAGATATTCACTGGATTCTCATTATTTGTTCCAAATGGCACAACTACTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTAATCAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATAGATGGAGTGAATTTGAAGAGTTTGCAAGTTAGATGGATAAGAGAACAGATTGGGTTGGTTAGTCAAGAACCTATCCTATTTACAACTAGTATCAAAGAGAACATAGCTTATGGGAAAGAAGGTGCAACTGATGAGGAGATAGCAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTAACACAATGGCAGGGCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATATTGAAGAACCCAAAAATCCTCCTTCTTGATGAAGCAACCAGTGCTTTGGATGCTGAGTCAGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACCATTAGAAATGCTAATACCATAGCAGTGGTTCATCAGGGGAAGATAGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGGTGAAGGTAGCCAGAAGAATGAAGCACACAAGTCTAGTAACAGCTTAATTTTAGATAGTCATATGATTAGATCAATAAGCAGAGGTTCATCAGGGAGTCGACACTCTCAATCCCTTAGCTTTGCTCTACCTTATCAAAGTGGTGGACAAACAGAAGAAGTGGGTGTTGAACAAAGTCATGTTGATAATAAGAATCCCAAAAGGGTTTCTATAAGACGTTTGGCATACCTAAATAAGCCTGAGGCTCTTGTCTTACTACTTGGATCCATTGCTGCAGCAATAAATGGTGTTGTGTTCCCTATATTTGGCCTCTTGTTTTCATCAGCCATTACTATGTTCTTTAAACCTCCAGAACAACAGCAGAAAGATGCTAGGTTCTGGACACTTCTTTATGTGGGCTTAGGTTTAGTTACTCTAGTGGTTTTCCCACTCCAAAATTACTTCTTTGGTATTGCTGGTGGAAAACTAATAGAGAGAATTCGTTCCTTAACATTTGAGAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTGCAAATTCTAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGACACCTTGTCCCTCATGGTGCAAAACATATCAACAATCACAACAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTAATAATTCTGGCTGTGTCACCCATGGTCATAATGCAAGGATGCATTCAAATGAGGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTTAAGTATGAAGAGGCAAGTCAAGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTTTGTGCAGAATCAAAGGTGATGGATATGTACAGGAAGAAATGTTCAAGGCCAGAAAAACAAGGCGTTCGGTTGGGGCTTGTTAGTGGTGCAGGACTTGGTTTCTCTTTTATGGCTCTATATTGCACAAATGCTTTTTGTTTCTACATAGGATCTGTTCTTGTGCGACATGGCCTTGCAACTTTTTCAGAGGTTTTCAGGGTGTTCTTTTGCATAACAATTACAGCAATTGGTGTTTCCCAGACAAATGCCTTAGCACCGGACACTAACAAGGCCAGAGATTCCGCAACTTCAATATTTGAAATTCTTGACAGCAAACCTATCATTGACTCAAGCAGCAATGAAGGTAGAACACTAGAAACAGTTACTGGCAATATTGAACTTCATCATGTCAACTTTAATTACCCAACAAGGCCTCATATTCAAATTCTCAGAGATTTGAGCTTAAAAATCCCATCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGTTGTGGAAAATCAACAATCATCAGTCTTTTGGAGAGGTTTTATAATCCTAGCTCTGGGCATATACTACTAGATGGTGTGGATATTAGAGAGTTCAGATTAAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCAAACATAGCTTATGGCAAAGAGGGAGGTGCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGTACACAACTATCAGGAGGGCAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTAAAAGACCCTAAAGTCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTTTAGACAGAGTCAGTGTGGATAGAACTACTGTTGTGGTAGCTCACCGTCTTACAACAATCAGAGGGGCTGATATTATAGCAGTAATTAAAAATGGGGTAGTTGCTGAAAAGGGGAAGCATGATGTCTTGATCAAGATTACTGATGGGGCTTATGCTTCATTGGTTGCTTTATATTCTGGTGCAGCATAA 3774 0.407 MAHNTSEVPPPQPQDHEKVTNNQKVPFYKLFTFADRLDVTLMIIGTICAMANGLSQPLMTLILGKLINAFGSNVPSQVVHQVSKVALLFVYLGVGSGIASFLQVSCWMVTGERQATRIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASTFFGGFVIAFVKGWQLALVLLSCIPLVIIAGGFMSVLMSRMSSRGQAAYAEAGNVVEQIVGAIRTVASFTGEKKAIEKYNIKLKVAYTTMVQQGMVSGLGMGVLMLIIFCTYGLAMWYGSKLVIEKGYIGGTVITVIVALMTGGMSLGQASPCVNAFATGQAAAYKMFETIKRKPKIDAYDTSGVILEDIKGDIELKDVHFTYPARPDVQIFTGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQVRWIREQIGLVSQEPILFTTSIKENIAYGKEGATDEEIATAITLANAKKFIDKLPQGLNTMAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHRLTTIRNANTIAVVHQGKIVEKGTHDELIKDVDGAYSQLIRLQEGEKEGEGSQKNEAHKSSNSLILDSHMIRSISRGSSGSRHSQSLSFALPYQSGGQTEEVGVEQSHVDNKNPKRVSIRRLAYLNKPEALVLLLGSIAAAINGVVFPIFGLLFSSAITMFFKPPEQQQKDARFWTLLYVGLGLVTLVVFPLQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLSLMVQNISTITTGLVIAFTANWILALIILAVSPMVIMQGCIQMRFLKGFSADAKVKYEEASQVATDAVGSIRTVASFCAESKVMDMYRKKCSRPEKQGVRLGLVSGAGLGFSFMALYCTNAFCFYIGSVLVRHGLATFSEVFRVFFCITITAIGVSQTNALAPDTNKARDSATSIFEILDSKPIIDSSSNEGRTLETVTGNIELHHVNFNYPTRPHIQILRDLSLKIPSGKTVALVGESGCGKSTIISLLERFYNPSSGHILLDGVDIREFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKVLLLDEATSALDAESERVVQEALDRVSVDRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGKHDVLIKITDGAYASLVALYSGAA. 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04877 1257 FunFam ABC transporter B family member 9 29 359 - -
Seca5g04877 1257 CDD ABC_MTABC3_MDL1_MDL2 1014 1250 - -
Seca5g04877 1257 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Seca5g04877 1257 FunFam ABC transporter B family member 1 354 603 - -
Seca5g04877 1257 FunFam ABC transporter B family member 1 672 980 - -
Seca5g04877 1257 Gene3D - 1004 1255 IPR027417 -
Seca5g04877 1257 ProSitePatterns ABC transporters family signature. 1154 1168 IPR017871 GO:0005524|GO:0016887
Seca5g04877 1257 SUPERFAMILY ABC transporter transmembrane region 29 348 IPR036640 GO:0005524|GO:0016020
Seca5g04877 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 602 IPR027417 -
Seca5g04877 1257 Gene3D - 362 615 IPR027417 -
Seca5g04877 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 693 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04877 1257 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Seca5g04877 1257 Pfam ABC transporter 385 531 IPR003439 GO:0005524
Seca5g04877 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 337 - -
Seca5g04877 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Seca5g04877 1257 Pfam ABC transporter 1032 1182 IPR003439 GO:0005524
Seca5g04877 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 682 997 - -
Seca5g04877 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04877 1257 SMART AAA_5 391 583 IPR003593 GO:0016887
Seca5g04877 1257 SMART AAA_5 1041 1228 IPR003593 GO:0016887
Seca5g04877 1257 Gene3D ABC transporter type 1, transmembrane domain 88 988 IPR036640 GO:0005524|GO:0016020
Seca5g04877 1257 Pfam ABC transporter transmembrane region 42 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04877 1257 Pfam ABC transporter transmembrane region 693 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04877 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1251 IPR003439 GO:0005524
Seca5g04877 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1251 IPR027417 -
Seca5g04877 1257 FunFam ABC transporter B family member 1 1004 1254 - -
Seca5g04877 1257 SUPERFAMILY ABC transporter transmembrane region 673 995 IPR036640 GO:0005524|GO:0016020
Seca5g04877 1257 PANTHER ABC TRANSPORTER B FAMILY 14 603 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04877 Seca-Chr5 106069734 106074681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04877 4 1252 Calmodulin-binding Proteins AT2G36910 45.613 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04877 K05658 - gmx:100801771 1971.44