Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04875 ATGAGAAGGTTTAGTTCAAGTTATAGTAACTCTGATGCTGATTTCATTTATCGTGGGGTTCTACTTCCCCTTTTTTTATCATCACAGATTTCCTTTCAACTCACAACTTGTGGCTCCATAGTACAGTTCCTTCCTGGATTAGAGGGACCCCTTCCTTTTCTGCTTGAAACCGGGTATGTGGGAGTGGGTGAAACAGAGGATGTACAAGCCTTCTATTACTTCACTGAGTCAGAGAACAATCCAAAGGAGGATCCTCTCATGCTTTGGCTAACCGGTGGACCTGGTTGCTCTGCCTTGTCTGGTCTTGTCTTTGAAATAGGTCCACTTGCATTCAAATACGAGGAATATAATGGGAGCCTCCCTAGTTTGGTGTTGAGGCCACACTCATGGACAAAGGTGAGTAGCATTATATTTGTAGATTTGCCAGTTTCCACGGGGTTTACTTATGCCACAACAGACTCTGCTGCTCAACGAAGCGACTGGTTACTAGTTCACCAAGTCCATCAATTTCTTAGGAAGTGGTTGATTGATCATCCAAAATTTCTGTCCAATGAAGTTTACATTGGTGGTGATTCCTACTCTGGCATTCCTATTCCAGCAATTGTTCAAGAAATTTCACAAGGAAATGAGAAAGGGGTTCAGCCATGGATAAATCTCCAGGGATACCTGCTAGGGAATGCCGTAACAACTGGAAGGGAGAAAAACTATGAAATCCCCTTTGCTCATGGAATGGGACTTATTTCTGATGAACTATATGAGTCACTGCAAAAGAATTGTAAAAAAGAGTATGTAAATGTAGACACCAAGAATGTATTGTGTTCAAGAGATATGAACTCATACAAGGAGGCTACATCAGGACTTAATACGGCACATATTTTGGACCCTTTATGCGAGTGGCTTGATAATACTCAAGTTTCTCGGAGGAGATCTCTAATTAAGAAATATCCCTCCAAGTTTCTCAATACTCATCTGAAATTGCCACCCTTAAGCTGTAGGAGTTATGCATATTTCCTTTGCGGTTATTGGGCCAATGATGATAATGTTCGCAAAGCACTGCACATACGTAAGGGAAGTATTGGGAAGTGGCATCGCTGTACCTACAATATACCTCACAGAAGGGAAATCTCTAGCAGCTTTGAGTATCATGTAAATCTAAGTAGGAAAGGCTATCGTTCACTAATATACAGGTCTCAAATATTGAATAAGATATATAGCACGGATGAACTAGTTTGA 1233 0.4104 MRRFSSSYSNSDADFIYRGVLLPLFLSSQISFQLTTCGSIVQFLPGLEGPLPFLLETGYVGVGETEDVQAFYYFTESENNPKEDPLMLWLTGGPGCSALSGLVFEIGPLAFKYEEYNGSLPSLVLRPHSWTKVSSIIFVDLPVSTGFTYATTDSAAQRSDWLLVHQVHQFLRKWLIDHPKFLSNEVYIGGDSYSGIPIPAIVQEISQGNEKGVQPWINLQGYLLGNAVTTGREKNYEIPFAHGMGLISDELYESLQKNCKKEYVNVDTKNVLCSRDMNSYKEATSGLNTAHILDPLCEWLDNTQVSRRRSLIKKYPSKFLNTHLKLPPLSCRSYAYFLCGYWANDDNVRKALHIRKGSIGKWHRCTYNIPHRREISSSFEYHVNLSRKGYRSLIYRSQILNKIYSTDELV. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04875 410 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 396 IPR001563 GO:0004185|GO:0006508
Seca5g04875 410 FunFam Serine carboxypeptidase-like 19 35 303 - -
Seca5g04875 410 Gene3D alpha/beta hydrolase 51 399 IPR029058 -
Seca5g04875 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 138 IPR001563 GO:0004185|GO:0006508
Seca5g04875 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Seca5g04875 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 149 IPR001563 GO:0004185|GO:0006508
Seca5g04875 410 Pfam Serine carboxypeptidase 45 397 IPR001563 GO:0004185|GO:0006508
Seca5g04875 410 SUPERFAMILY alpha/beta-Hydrolases 41 395 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04875 Seca-Chr5 106046227 106049710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04875 37 64 Calmodulin-binding Proteins AT2G22960 71.429 1.34e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04875 K16296 - gmx:100792006 680.248