Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04872 ATGGTGGAGGGCCATGGGCCCAAACATGATATGGGCTTGCGGGTCAAATCGGAACCGAGAGAGACTCTAGGGTTAGGGTTTTTTGAGCTGCACTTGCCATACTCTTACCGATTTACAATCACACTTGCCTCCGTTCCCACTCTCTGTCACCTCTCCTTGCTGCTTGGAACAATGCCTAAGCAAATCCATGAGATTAAGGATTTCCTTCTCACTGCCCGAAGGAAGGATGCGAGGTCAGTGAAAATCAAGAGGAGCAGAGATGTGGTGAAGTTCAAGGTCAGATGCTCCAAGTATCTCTACACACTTTGCGTGTTTGACCCAGAGAAAGCTGATAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTGTAA 381 0.4751 MVEGHGPKHDMGLRVKSEPRETLGLGFFELHLPYSYRFTITLASVPTLCHLSLLLGTMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04872 126 FunFam 60S ribosomal protein L38 58 126 - -
Seca5g04872 126 Gene3D - 58 126 IPR038464 -
Seca5g04872 126 PANTHER 60S RIBOSOMAL PROTEIN L38 58 125 IPR002675 GO:0003735|GO:0005840|GO:0006412
Seca5g04872 126 Pfam Ribosomal L38e protein family 59 125 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04872 Seca-Chr5 106017998 106027240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04872 58 126 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 3.95e-43 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04872 K02923 - pop:18106877 140.584