Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04871 ATGAGGCTTTCTTCATCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAGGCGAGTTTTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCCTTACCAGCAGTTGGAAGTCGCGTTGTATACTTCCCACAAGGTCACAGTGAACAAGTTGCCGTGTCAACCAACAAGGAAGTGGATGCCCATATTCCAAACTATCCGAGCTTACCACCTCAACTCATTTGTCAACTTCATAATCTGACTATGCATGCTGATGCTGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAGAAGGAGGCATACCTTCCAGCTGAGTTGGGTACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACTAGCACTCATGGGGGATTCTCTGTGCCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGACATCTACTTACTACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCTGTCCTGTTTATCTGGCAATGCATTTTCTTCAATAGGAATGAAAAGAACCAATTGCTTCTTGGCATTCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCGGCAGCTCATGCAGCTGCAACGAATAGTCGATTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATTCCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTTCGGTGGCCGAATTCACATTGGCGCTCAGTGAAGGTTGGGTGGGATGAATCCACTGCAGGAGTGAGGCAACCTAGAGTGTCTTTATGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCTCCGGGATTGCCTTCATTCCATGGCATGAAGGATGATGATTTTGGCCTAAATTCTCCTCTGTTGTGGCTTCGAGACACTGATAGAGGCCTTCAGTCTCTTAATTTTCAGGGGATTGGGGTTAATCCTTGGATGCAGCCAAGGTTTGATCCTTCCATGCTGAATATGCAACCAGATATGTATCAAGCTGTGGCTGCTGCTGCACTACAGGACATGAGGAGTGTAGACCCTTCCAAACAGCATCCTGGTTCCTTACTGCAATTTCAGCAACCACAGAACATCCCAAACAGGACTGCTGCCCTAATGCAGTCCCAGATGTTGCAACAGTCACAACCTCAACAGGTTTTTCAAAATAATCAGGAGAATCAACATCCGTCGCAATCCCAGCAACAAGCTCAGACTCATCTTCAGCAACATCTACAGCATCAGCACTCATTCAATAGTCAACAACATCATCATCACAACCAGCAGCAGCAGCAACAACAAACTCAACAGCAAGTGGTAGATAATCAGCAGATTTCCAATGTAGTCTCTACAATGTCTCCATTTGTTTCAGCACCTCAACCTCAATCATCACCTATGCAAGATCTCTCTTCACTGTGTCAACAGCAAAGTTTTTCAGATTCAAATGGGAATCCTGTGACTACTGCTATTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTCTGAATCTCCCTAGAACAAGCTCTTGGGTTCCTGTTCAAAACTCAACTGGATGGCCCTCCAAGCGTGTTGCTGTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCCAGTAGAGCAGTTAGGGCAACCACAGAGTAGCATAACTCAAAATGCTATTACATTGCCACCATTTCCTGGTAGGGAATGTTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTTTTATTTGGTGTTAATATAGAGCCCTCATCTCTTCTAATGCATAATGGGATGTCAAGCCTTAAGGGGATTAGCAGCAACAGTGACTCCTCAACCTTGCCCTATCAATCTTCTAATTACCTGAATACCACAGGCACTGATTCTTCATTGAATCATGGAATGACACATAGCATGGGTGAATCGGGCTTTCAGCAGACACCAGAAAATGCGGGGCAGGGAAACTCACCAAACAAGACCTTTGTTAAGGTTTATAAATCAGGGTCCTTTGGAAGATCACTGGATATTACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAGCTCGCTCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTTGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCTCAGGAAGTGCAGCAAATGGGCAACACCGGCCTCGAGCTATTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGGATAACAACTGTGGGGTCTTTAGACTACTGA 2733 0.4603 MRLSSSGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWQCIFFNRNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGVRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQPDMYQAVAAAALQDMRSVDPSKQHPGSLLQFQQPQNIPNRTAALMQSQMLQQSQPQQVFQNNQENQHPSQSQQQAQTHLQQHLQHQHSFNSQQHHHHNQQQQQQQTQQQVVDNQQISNVVSTMSPFVSAPQPQSSPMQDLSSLCQQQSFSDSNGNPVTTAISPLHSILGSFPQDETSHLLNLPRTSSWVPVQNSTGWPSKRVAVDPLLSSGASQCVLPPVEQLGQPQSSITQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPSSLLMHNGMSSLKGISSNSDSSTLPYQSSNYLNTTGTDSSLNHGMTHSMGESGFQQTPENAGQGNSPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNTGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITTVGSLDY. 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04871 910 CDD B3_DNA 126 215 IPR003340 GO:0003677
Seca5g04871 910 MobiDBLite consensus disorder prediction 487 552 - -
Seca5g04871 910 Gene3D - 298 370 - -
Seca5g04871 910 Pfam B3 DNA binding domain 127 235 IPR003340 GO:0003677
Seca5g04871 910 FunFam Auxin response factor 772 866 - -
Seca5g04871 910 FunFam Auxin response factor 298 370 - -
Seca5g04871 910 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca5g04871 910 SUPERFAMILY CAD & PB1 domains 771 852 - -
Seca5g04871 910 Pfam AUX/IAA family 764 862 IPR033389 -
Seca5g04871 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca5g04871 910 MobiDBLite consensus disorder prediction 739 775 - -
Seca5g04871 910 SMART B3_2 127 236 IPR003340 GO:0003677
Seca5g04871 910 Gene3D - 773 866 - -
Seca5g04871 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Seca5g04871 910 ProSiteProfiles B3 DNA-binding domain profile. 127 236 IPR003340 GO:0003677
Seca5g04871 910 SUPERFAMILY DNA-binding pseudobarrel domain 112 263 IPR015300 -
Seca5g04871 910 Gene3D - 125 235 IPR015300 -
Seca5g04871 910 FunFam Auxin response factor 125 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04871 Seca-Chr5 106006782 106013583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04871 1 490 B3 DNA Binding Superfamily AT1G30330 85.051 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca5g04871 AUX_IAA 4.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04871 - - gmx:100798719 1545.79