Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04856 ATGTTAGAGAGTGCTGGTAGCGAGCGTGATTCTGGGATGAGCTTGGAGACTCTGAATTCTTCCACGCAGCGAACTTCAATGAGCAGCGGCACTGAAAGCATTTGCAGCACCAGTTTCAGCCGTCTCTCCTTCGACCTTCTTCCTACCTCTTCGCCGGAGAGTCTCTCAGTTAAGCCTCACCGTTCCTCCGACTTCGCCTACTCCGCTATACGCTCCGCCACCTTCGGCCGCAAGTCCGGCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGTATCGGCTCCGGCGACATCGGCACCGTCTATCTATGCCGTCTCCGCGACGGCGTCGCCCATGATTTCGACGACGATGCAGCGTGCTTCTACGCCATGAAGGTGGTCGACAAGGAAGCCGTAGCACTCAAGAAGAAGTCGCAGAGAGCAGAAATGGAAAGGAAGATTCTCAAAATGCTCGACCATCCTTTCCTCCCTACGCTTTACGCAGAGTTTGAAGCCTCTCATTTCTCTTGCATTGTCATGGAGTATTGTTCCGGTGGAGACTTGCACTCCCTTCGACACCACCACGCTAACAATCGATTCTCTCTCTCCTCTGCAAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTACCTGCACATGCTGGGAATCATCTACAGGGATCTAAAGCCAGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTCTCTGATTTTGATCTTTCTTTATGTTCTGATGCAATCCCAGCCGTTGAATCCCCAGATGATGCTGCATTCACACCTTCGTTGCCCTACACCCGCCCGCATTCCACCCCCTTCGCGTGCCTCTCGAAACGAATCTTCCGGTCCAGAAAGGTACAGACCCTTCAACCGAACCGGCTCTTCGTTGCGGAACCGGTTGGGGCCAGGTCATGCTCGTTTGTAGGGACCCACGAGTACGTGTCGCCGGAGGTGGCTTCCGGTAACTCGCACGGCAACGCCGTGGACTGGTGGTCCTTCGGCATATTCATCTACGAGATGGTGTACGGTCGCACACCGTTCGCGGGTCCATCCAACGAGGCTACGCTGCGTAACATCATAAAAAAGCCCCTTACCTTCCCTACCGCCACGCCCTCCAGCACGCTTGAAATGCACGCGCGGGACCTCATATCCGGGTTGCTGAACAAGGACCCGAACCGTAGGCTCGGGTCGAAGCGGGGCGCTGCTGACGTCAAGAAGCACCCGTTCTTTGCAGGGTTCAACCTGGCCCTTATACGTATGGTCACACCACCGGAGGTGCCGTCCCTCAGAAAGCAGAAAACGACACCGGTTTTCCACGCGAAAGATAGCAACGGTAACAGAGATGGCAATAGACAGCATCCTACGGCGTCGTTTGATTACTTTTGA 1386 0.5512 MLESAGSERDSGMSLETLNSSTQRTSMSSGTESICSTSFSRLSFDLLPTSSPESLSVKPHRSSDFAYSAIRSATFGRKSGLTFRDFHLLRRIGSGDIGTVYLCRLRDGVAHDFDDDAACFYAMKVVDKEAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHHHANNRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESPDDAAFTPSLPYTRPHSTPFACLSKRIFRSRKVQTLQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAGPSNEATLRNIIKKPLTFPTATPSSTLEMHARDLISGLLNKDPNRRLGSKRGAADVKKHPFFAGFNLALIRMVTPPEVPSLRKQKTTPVFHAKDSNGNRDGNRQHPTASFDYF. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04856 461 CDD STKc_phototropin_like 84 430 - -
Seca5g04856 461 Gene3D Phosphorylase Kinase; domain 1 84 174 - -
Seca5g04856 461 PANTHER FLIPPASE KINASE 1-RELATED 21 430 - -
Seca5g04856 461 SUPERFAMILY Protein kinase-like (PK-like) 69 432 IPR011009 -
Seca5g04856 461 MobiDBLite consensus disorder prediction 428 461 - -
Seca5g04856 461 FunFam protein kinase PINOID 175 243 - -
Seca5g04856 461 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Seca5g04856 461 FunFam protein kinase PINOID 2 84 174 - -
Seca5g04856 461 Gene3D Transferase(Phosphotransferase) domain 1 303 428 - -
Seca5g04856 461 MobiDBLite consensus disorder prediction 1 31 - -
Seca5g04856 461 FunFam serine/threonine-protein kinase D6PK-like 302 428 - -
Seca5g04856 461 Pfam Protein kinase domain 86 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04856 461 Pfam Protein kinase domain 305 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04856 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Seca5g04856 461 MobiDBLite consensus disorder prediction 10 31 - -
Seca5g04856 461 SMART serkin_6 86 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04856 461 Coils Coil 123 143 - -
Seca5g04856 461 Gene3D Phosphorylase Kinase; domain 1 429 438 - -
Seca5g04856 461 ProSiteProfiles Protein kinase domain profile. 86 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04856 Seca-Chr5 105868100 105869910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04856 8 461 AGC Kinase Gene Family AT2G34650 66.307 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca5g04856 Pkinase 7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04856 - - gmx:100795536 750.74