Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04855 ATGCAAAATGATGATCCGGCCTCAATTGGTTACGTTTATGCCTTCTCAATATTTCTCGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTTATGCGTGTTGGTTTCCGGCTAAGATCAACACTGGTGGCTGCTGTATTTCGCAAGTCTCTAAGGCTTACCCATGAAGCGCGAAAGCAATTTGCGTCTGGAAAAATAACCAACTTGATGACTACTGATGCCGAGGCACTTCAGCAAATATGCCAGTCACTTCACACTTTGTGGTCAGCGCCAGTTCGAATTACTGTTGCTATGGTTCTTCTTTACCAACAACTAGGCGTTTCTTCCCTTCTTGGTGCACTGATGCTAGTTCTTATGTTTCCACTACAGACATTTGTCATTAGCAGAATGCAGAAGTATTCTAAGGAAGGATTACAACGTACAGACAAGAGAATTGGTCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACAGAGTGTCCGAGATGATGAACTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTTCAATGGATTTATGCTCAATAGCATCCCAGTTTTTGTAACTGTGGTTTCATTTGGAATGTTCACCTTACTTGGAGGGGATTTGACACCTGCAAGAGCTTTCACATCACTTTCTCTGTTTGCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGTGGTTAATGCAAATGTATCTCTGAAGCGTATGGAGGATTTGCTCTTAGCAGAAGACAGAGTACTCCTGCCAAATCCACCTCTTGAGCCTAGCTTACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATGCGAAGGCAGAGAGGGCCACATTGTCAAACATAAATTTGGATATACCTGTCGGTAGCCTAGTTGCAGTTGTTGGCAGCACAGGAGAAGGGAAGACATCACTTGTATCAGCAATGCTTGGAGAACTTCCTCCACTTGCAGATTCAACTGTTGTTATGAGAGGAGCAGTTGCTTATGTGCCCCAAATTTCATGGATTTTTAATGCAACTGTACGGGATAATGTTTTGTTTGGTTCTGTCTTTGACCCGACAAGATATGAAAGGGCAATAGATGTGACTGAACTGCATCACGACCTTGAGTTACTGCCAGGTGGTGATCTTACTGAAATTGGTGAAAGAGGGGTAAACATTAGCGGTGGCCAGAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGTACATCTTTGATGATCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGGTTTTTGACAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACAAATCAGCTTCACTTTCTTTCACAGGTTGATAGAATCATTTTGATCCATGAAGGTATGGTGAAGGAGGAGGGAACCTTTGAGGAACTCTCTAACCATGGACCGTTGTTCCAAAAGCTTATGGAAAATGCGGGAAAGATGGAGGAGTATGAAGAAGAAAAGCTAGATACTGAAACCACTGATCAGACTCAGAAGTCCTCTTCAAAACCAGTGGCAAATGGAGCAATTGATGATTATGCAAAGAGTGGAAGTAAACCGAAAGAAGGAAAGTCCATCCTTATTAAACAGGAGGAACGGGAAACAGGTGTTGTCAGTTGGAATGTTCTGATGAGGTACAAAAATGCACTAGGAGGCTCTTGGGTGGTTCTAATACTCTTTGCATGCTATGTCTCAACTGAAGCATTACGAGTGTCAAGTAGCACATGGTTAAGCCATTGGACTGATCAGGGTGCTTCAGAGGGTTATAATGCTGCCTTCTACAATCTGATATATGCATCTCTATCATTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCTGCCAGAAGGTTGCATGAAGCTATGCTTCACTCCATATTACGAGCTCCCATGCTCTTCTTCCACACAAATCCACTTGGAAGGGTAATCAACAGGTTCGCGAAGGATCTAGGCGACATCGATCGCAATGTTGCCCCATTTGTCAACATGTTTCTAGGTCAAGTGTCCCAGCTTCTTTCAACCTTCATCCTGATAGGGATAGTCAGCACAATGTCCTTGTGGGCGATAATGCCATTGTTGGTATTGTTTTATGGAGCATATCTATACTATCAGAGCACAGCTCGTGAAGTGAAGCGATTAGATTCAATTAGCAGATCTCCTGTTTACGCACAATTTGGAGAAGCGCTAAATGGTTTATCGACAATTCGTGCTTACAAAGCTTACGATCGAATGGCAGATATAAATGGGAGATCAATGGACAACAACATCCGATTCACGCTGGTGAACATGAGTGCAAACCGATGGCTTGCAATCCGGTTGGAAACCCTAGGAGGTCTCATGATATGGTTCACTGCAACCTTTGCGGTAATGCAGAATGGTAAAGCAGCGAACCAGCAGGAATTCGCATCCACCATGGGATTGCTTCTCAGTTATGCTTTGAACATCACCAGCTTGCTCACTGGTGTGCTCAGGCTTGCAAGTTTGGCCGAGAATAGTTTAAATGCAGTTGAGAGGATTGGAACTTACATAGATTTACCTTCAGAGGCTCCTTCTGTGATTGAAGATAATCGCCCTCCCCCTGGGTGGCCTTCGTCCGGGTCGATCAAATTCGACGATGTTGTTCTTCGCTACAGGCCTGAACTTCCTCCTGTACTGCATGGCCTCAATTTCTCGATTTTCCCAAGCGATAAGGTTGGCATTGTTGGGAGGACAGGCGCGGGAAAATCCAGCATGCTCAATGCTCTGTTTCGAATTGTGGAATTGGAAAGAGGGAAAATTTTAATTGATAATTGTGATATTGGGAAGTTTGGGTTGGCTGATTTGCGGAAAGTTCTTGGCATTATACCACAGTCTCCCGTTCTCTTTTCAGGAACTGTGAGATTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTTTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAGTTCTCTGGGGCTGGATGCTGAGGTATCTGAGGCAGGTGAGAACTTCAGTGTTGGACAGAGGCAACTTTTGAGTCTTTCCAGGGCTTTATTGCGGAGATCTAAGATATTAGTACTTGACGAGGCAACTGCAGCAGTTGATGTTAGAACAGATGCACTCATACAGAAAACAATCCGAGAGGAATTTAAATCCTGTACCATGCTCATTATTGCTCATCGCCTTAACACCATTATTGATTGTGATCGCATTCTTTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAGCTGCTGTCAAATGAAGATAGTGCTTTCTCGAAGATGGTGCAAAGTACAGGAGCTGCAAATGCCCAATACTTACGCAGCTTAGCACTTGGTGGGGACAAATCAGAAAGAGAAGGGAACAAGCATGTAGATGGTCAGAGAAAATGGCTGGCTTCTTCTCGGTGGGCTGCTGCAGCCCAATTTGCTCTTGCTGTCAGTCTCACGTCATCACATAATGACCTACAACGATTGGAAGTAGAAGATGAGAACAGTATTCTCAAGAAGACAAAGGATGCTCTGATAACTTTGCAAGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAGCAGCGCCAAATATCCCCGGAGGGATGGTGGTCATCGCTTTACAAGATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGACTATGGTTTTGAAGACAGATCAATTAACTTTGATCAAGTTGATATGTAG 3876 0.4358 MQNDDPASIGYVYAFSIFLGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAEALQQICQSLHTLWSAPVRITVAMVLLYQQLGVSSLLGALMLVLMFPLQTFVISRMQKYSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSKVQSVRDDELSWFRKASLLGAFNGFMLNSIPVFVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRMEDLLLAEDRVLLPNPPLEPSLPAISIKNGYFSWDAKAERATLSNINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPPLADSTVVMRGAVAYVPQISWIFNATVRDNVLFGSVFDPTRYERAIDVTELHHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILIHEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEKLDTETTDQTQKSSSKPVANGAIDDYAKSGSKPKEGKSILIKQEERETGVVSWNVLMRYKNALGGSWVVLILFACYVSTEALRVSSSTWLSHWTDQGASEGYNAAFYNLIYASLSFGQVLVTLTNSYWLIISSLYAARRLHEAMLHSILRAPMLFFHTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMSANRWLAIRLETLGGLMIWFTATFAVMQNGKAANQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSVIEDNRPPPGWPSSGSIKFDDVVLRYRPELPPVLHGLNFSIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGKILIDNCDIGKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRSSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEDSAFSKMVQSTGAANAQYLRSLALGGDKSEREGNKHVDGQRKWLASSRWAAAAQFALAVSLTSSHNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPEGWWSSLYKMIEGLAMMSRLARNRLHQSDYGFEDRSINFDQVDM. 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04855 1291 FunFam Multidrug resistance-associated protein member 4 893 1145 - -
Seca5g04855 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1142 IPR027417 -
Seca5g04855 1291 ProSitePatterns ABC transporters family signature. 1046 1060 IPR017871 GO:0005524|GO:0016887
Seca5g04855 1291 Pfam ABC transporter 926 1074 IPR003439 GO:0005524
Seca5g04855 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 253 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04855 1291 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 11 1149 - -
Seca5g04855 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 589 872 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04855 1291 CDD ABCC_MRP_domain1 285 485 - -
Seca5g04855 1291 Gene3D - 279 536 IPR027417 -
Seca5g04855 1291 CDD ABC_6TM_ABCC_D2 588 884 IPR044726 GO:0140359
Seca5g04855 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 508 IPR027417 -
Seca5g04855 1291 SMART AAA_5 935 1128 IPR003593 GO:0016887
Seca5g04855 1291 SMART AAA_5 312 495 IPR003593 GO:0016887
Seca5g04855 1291 SUPERFAMILY ABC transporter transmembrane region 7 265 IPR036640 GO:0005524|GO:0016020
Seca5g04855 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 285 509 IPR003439 GO:0005524
Seca5g04855 1291 CDD ABCC_MRP_domain2 907 1127 - -
Seca5g04855 1291 Gene3D ABC transporter type 1, transmembrane domain 1 270 IPR036640 GO:0005524|GO:0016020
Seca5g04855 1291 Gene3D ABC transporter type 1, transmembrane domain 552 890 IPR036640 GO:0005524|GO:0016020
Seca5g04855 1291 FunFam ABC transporter C family member 2 552 890 - -
Seca5g04855 1291 CDD ABC_6TM_ABCC_D1 3 261 IPR044746 GO:0140359
Seca5g04855 1291 Pfam ABC transporter 303 438 IPR003439 GO:0005524
Seca5g04855 1291 SUPERFAMILY ABC transporter transmembrane region 586 889 IPR036640 GO:0005524|GO:0016020
Seca5g04855 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 909 1143 IPR003439 GO:0005524
Seca5g04855 1291 FunFam ABC transporter C family member 2 1 270 - -
Seca5g04855 1291 Pfam ABC transporter transmembrane region 4 241 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04855 1291 Pfam ABC transporter transmembrane region 588 831 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04855 1291 Gene3D - 892 1145 IPR027417 -
Seca5g04855 1291 ProSitePatterns ABC transporters family signature. 411 425 IPR017871 GO:0005524|GO:0016887
Seca5g04855 1291 FunFam ABC transporter C family member 2 279 525 - -
Seca5g04855 1291 MobiDBLite consensus disorder prediction 515 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04855 Seca-Chr5 105839019 105853414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04855 285 536 Calmodulin-binding Proteins AT2G36910 28.839 1.20e-27 120