Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04846 ATGAGGAGAAATTGCAATTTGGAACTTCGCCTTTTTCCACCCTACGATTCCGGCGGCCACCGCAACCACCCCATGATAGAAGAAGCCAGCCAGAGCCCAATGCAAAATTACTTCCAGCAGCAGCAGGAACAGCAACAACAACAGCCACTCACCATTTTCTATGATGGCAAGATTTGTGTTGCTGATGTCACAGAGCTTCAGCAGGCCAAATCAATCTTAATGCTTGCAAATAAAAAAGCACAAGAAAGAGTGAGGACACCAACGGGGTCAGAGCCATGTTCACCAACAGTAGCAGTGCAATCTCAATTGTATAGCCCTGGCACTGGCCTTTCCATGAAGAGATCGTTGCAGCGGTTCCTCCAAAAGAGAAGGAATCGAGCCCAAGAAGCTTCGCCATACCATCACTAG 408 0.4804 MRRNCNLELRLFPPYDSGGHRNHPMIEEASQSPMQNYFQQQQEQQQQQPLTIFYDGKICVADVTELQQAKSILMLANKKAQERVRTPTGSEPCSPTVAVQSQLYSPGTGLSMKRSLQRFLQKRRNRAQEASPYHH. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04846 135 Pfam Jas motif 113 133 IPR018467 -
Seca5g04846 135 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 133 IPR040390 -
Seca5g04846 135 SMART tify_2 43 78 IPR010399 -
Seca5g04846 135 Pfam tify domain 44 77 IPR010399 -
Seca5g04846 135 ProSiteProfiles Tify domain profile. 43 78 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04846 Seca-Chr5 105736161 105738542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04846 1 134 Tify Gene Family AT1G30135 39.706 3.92e-23 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca5g04846 tify 8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04846 - - gmx:100500349 194.897