Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04828 ATGTCATTTTCCTGTGCCAAAAGCTTCTTTCAAAGGTTCTGGGTTGATGAATTTCAAATGGGAAGTCTTGCCCATACCAGCTTTTTGTCCAATGATCTCCTGCCATCTCTTGGAGCCAGAATAAACCAGGAAACTAAACTAGGAAAATACATAATCTCCCCTTTCAATCCTCAGTATAGGGCTTGGGAGATGGTGCTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCGTTTGAGTTTGCCTTTCTGCCTTACGAGCGAAATGCACTATTCATCATTGATAACATTGTTAATGGCTTCTTTGCCATTGACATTGTGCTGACATTCTTTGTTGCATACCTAGATAGCCATTCTTATCTTCTAGTTGATGATCCAAAGAAAATTGCAGTCAGGTACATATGTACCTGGTTTGCTTTTGATGTATGCTCAACGGCACCACTTGAGTCCATCACCCTCATCTTCACTGATCATAGCTCTGAGCTTGGCTTCAAAGTTCTTAACATGTTTCGTTTATGGCGTCTGAGACGAGTCAGTTCTCTGTTTGCCAGACTTGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGATGCACAAAACTCATTGCTGTAACCCTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATTTAATTGCAGATAGGTATCCAGATCCAAAAAGAACCTGGATTGGTGCAATGTACCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCTATTGTCACACTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGACATCGCTTACATGATGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTTGTGCACTGGACCAGCCGCACCAGAAATTTTAGGGATACCGTCAAAGCAGCTTCTGAATTTGCTTCAAGAAATCATTTGCCCCCTCGCATACAGGATCAAATGATGGCACACATATGCTTGAGGTTTAAAACAGAAGGATTGAAGCAGCAAGAAACATTAAATGATCTACCAAAGGCAATTCGTTCAAGCATTGCACACCATCTCTTCTTTCCTGTTGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAGTATTTCCCACCCAAGGAAGATGTGATACTACAAAATGAGTCTTCTACAGACCTTTATGTGCTGGTTTCAGGGGCAGTGGTGAGTTAG 1275 0.4149 MSFSCAKSFFQRFWVDEFQMGSLAHTSFLSNDLLPSLGARINQETKLGKYIISPFNPQYRAWEMVLVVLVIYSAWICPFEFAFLPYERNALFIIDNIVNGFFAIDIVLTFFVAYLDSHSYLLVDDPKKIAVRYICTWFAFDVCSTAPLESITLIFTDHSSELGFKVLNMFRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDPKRTWIGAMYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMMFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPPRIQDQMMAHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLVSEMEAEYFPPKEDVILQNESSTDLYVLVSGAVVS. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04828 424 Gene3D Helix hairpin bin 301 363 - -
Seca5g04828 424 PANTHER POTASSIUM CHANNEL AKT1 26 423 IPR045319 GO:0005249|GO:0006813
Seca5g04828 424 Gene3D Jelly Rolls 364 424 IPR014710 -
Seca5g04828 424 ProSiteProfiles cAMP/cGMP binding motif profile. 377 424 IPR000595 -
Seca5g04828 424 SUPERFAMILY cAMP-binding domain-like 304 422 IPR018490 -
Seca5g04828 424 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca5g04828 424 Gene3D - 59 300 - -
Seca5g04828 424 FunFam Potassium channel KAT3 61 301 - -
Seca5g04828 424 CDD CAP_ED 377 422 IPR000595 -
Seca5g04828 424 SUPERFAMILY Voltage-gated potassium channels 54 300 - -
Seca5g04828 424 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g04828 424 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g04828 424 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g04828 424 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g04828 424 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g04828 424 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04828 Seca-Chr5 105548324 105554155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04828 1 422 Ion Channels AT5G46240 78.436 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04828 K21867 - gmx:100783528 783.482