Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04819 ATGGAGCAGCAGTACGGCCGGTCCAGTGAAGGGTCGCGGTCTGATCCGTCGCCGGAATGGACCGGACCCGGGGTTGAAACCGGGCTCGAAGAGCCTATGTGGCAATTGGGGTTGGGTGCTGCCGAGGAATCGTACCCGCAACGCCCCGATGAGGCTGATTGTACCTACTATTTAAGAACCGGCTTCTGTGGCTTCGGTTCGCGGTGTCGGTTCAACCATCCTCGTGACCGTGGCGCGGTTATTGGAGCTGGGAGGACTGCAGGGGACTATCCAGAACGAGCAGGCCAGCCTGTGTGCCAGTTTTATATGAGGACAGGATCATGCAAATTTGGTGCGTCTTGCAAGTACCACCACCCTAGGCAGGCAGGAGGCACTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAAAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACTTACTGCTAGTGGTCAAATTCAAACACCATCACATGTTCCCCCAGTTTCGCCTTTACCTGTGCAGGTACCTTCACCAATGTATCCAACCATACAACCTCCATCCGGTCCTTCATCACAACAAATTGGTGTACTGGTTGCAAGGCCGCCTCTAATGCCTGGTTCGTTTGTCCAGAGCCCCTATGGACCTATGGTAGTGTCCCCTACAATGGTCCCTATGTCTGGCTGGGGTCCTTATCAGGTAGGTCAAGCATTTCTCTTTGACTGCTCAGTCAAATTATGTGGGCATTCGTTGAAGCTGTTAACTGTTGAGCTTTTGGCGCAGGCTCCTGCAACAAACCCTGTACTTCCTTCTAGTACTCCATCTAATGTTGGCTCAACACAGCTTTATGGGATAACTCAGCTACCTTCATCAGCAGCTGCTTATACTGGATCTTATCAACCTTCTGGTTCCTCAGGTGGTCCTTCAAGCAGTAGCCCGAAGGAGCAGTCATACATGAATGCACCAAAAGTGAATGTGGTCCTTAGCCCTGCAGGTCTTCCATTGCGTCCGGGGGCACAACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATGACTTCACTGAGTTATAGTCCATCTGCTTCTTCCCTTGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCATCAATTGGTACTCTTGCTCCGTCATCTTCATCATCAGAGTTGCAGCCTGAACTTACCACAGGATCCAACAAGGAGTCCATTCCATCCAGAATATCTTCATCAGTGAGCAGCACATTGACAGGATCGGTTGGCTTGACTTTGTCTACTGGTGGACCTGTTTCTCAATCAAGCACTCAACCATCTACTCAGAGTTCCAGTCCTTTAGCAGCTGCCAATACCACAAGTAGCAATGTCTCTCACAACTCAAGCTAA 1449 0.4983 MEQQYGRSSEGSRSDPSPEWTGPGVETGLEEPMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRFNHPRDRGAVIGAGRTAGDYPERAGQPVCQFYMRTGSCKFGASCKYHHPRQAGGTATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPLTASGQIQTPSHVPPVSPLPVQVPSPMYPTIQPPSGPSSQQIGVLVARPPLMPGSFVQSPYGPMVVSPTMVPMSGWGPYQVGQAFLFDCSVKLCGHSLKLLTVELLAQAPATNPVLPSSTPSNVGSTQLYGITQLPSSAAAYTGSYQPSGSSGGPSSSSPKEQSYMNAPKVNVVLSPAGLPLRPGAQPCTHYAQRGVCKFGPACKFDHPMTSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELQPELTTGSNKESIPSRISSSVSSTLTGSVGLTLSTGGPVSQSSTQPSTQSSSPLAAANTTSSNVSHNSS. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04819 482 Gene3D - 46 123 - -
Seca5g04819 482 Gene3D - 348 402 - -
Seca5g04819 482 Gene3D - 124 174 - -
Seca5g04819 482 PANTHER PROTEIN PHOSPHATASE RELATED 31 411 - -
Seca5g04819 482 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Seca5g04819 482 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Seca5g04819 482 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Seca5g04819 482 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Seca5g04819 482 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Seca5g04819 482 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Seca5g04819 482 MobiDBLite consensus disorder prediction 308 329 - -
Seca5g04819 482 MobiDBLite consensus disorder prediction 403 482 - -
Seca5g04819 482 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Seca5g04819 482 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Seca5g04819 482 MobiDBLite consensus disorder prediction 1 31 - -
Seca5g04819 482 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Seca5g04819 482 MobiDBLite consensus disorder prediction 1 16 - -
Seca5g04819 482 SUPERFAMILY CCCH zinc finger 351 378 IPR036855 GO:0046872
Seca5g04819 482 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Seca5g04819 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Seca5g04819 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 375 IPR000571 GO:0046872
Seca5g04819 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Seca5g04819 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Seca5g04819 482 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04819 Seca-Chr5 105414266 105424604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04819 1 437 C2H2 Transcription Factor Family AT5G18550 49.269 1.57e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g04819 zf-CCCH 9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04819 - - gmx:100812433 630.172