Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04818 ATGTCTACCTCTAGAACCTCAGATTCTTTCCTCAAAGGATATGAACCCAATCAAACCCAAATGAATTTATCTCTTCTTCAACGCAATACATCACCTTCTGGTGACAGAAGAGGCAGAAGAAAGCAAGCAGAACCAGGGAAGTTTCTTGGGGTAAGGAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCATGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGTAGCCAAGCAAGAACCAACTTCATTTACTCTGATGATACTAATTTTCACAATGTTCTTCTTACTCCTATGGATATTCAAGCTCTTTTACCACCTTCACAGTTCCTCACTAACACTCAGAACACACATCCAAGTCCAACCAATCAAAATAGTTCCCACAATGAAAACCCCTCTCACTTGAACAATGAAACTGCACATGGGTCACCTCATGATCATGATAATTTCTTTTTCTCCAATGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTTCTTCCAGTACTTCAAACTTCAGGAAGAGCAATGTTAGTGCTTCAAGTGACCAAAAGGTTAGCACAGTTAACACAAACTCCATGCAGGGTCAATCATATTTTGACAACACTGCATTCTCTCAAGAACATTTCAACATGCAGACAGTGGCCTCTAACTATGCAGATTTTTCTTACCCAAGTCAAGGATTATGGGATAATCAGCAATCATGGGATTGCAATTCCAATGAACTTTCAGCTATGTTTAACAATCCATCAAGGAATGAAGATGGATGTATGTATGCATTATGTCCCATCAATGACAGTCCAAGCTATGGGCTAATGACTGAGGCTGTTTCTTCAACTACCTCTTCTCCATCATTTCCTCCATTTGGTGATGTTGACTTGGGATACTCACTCTTCTGA 978 0.407 MSTSRTSDSFLKGYEPNQTQMNLSLLQRNTSPSGDRRGRRKQAEPGKFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGSQARTNFIYSDDTNFHNVLLTPMDIQALLPPSQFLTNTQNTHPSPTNQNSSHNENPSHLNNETAHGSPHDHDNFFFSNDSNSGYLECIVPDNCFRPSSSTSNFRKSNVSASSDQKVSTVNTNSMQGQSYFDNTAFSQEHFNMQTVASNYADFSYPSQGLWDNQQSWDCNSNELSAMFNNPSRNEDGCMYALCPINDSPSYGLMTEAVSSTTSSPSFPPFGDVDLGYSLF. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04818 325 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Seca5g04818 325 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Seca5g04818 325 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 220 - -
Seca5g04818 325 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Seca5g04818 325 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Seca5g04818 325 MobiDBLite consensus disorder prediction 1 32 - -
Seca5g04818 325 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Seca5g04818 325 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Seca5g04818 325 MobiDBLite consensus disorder prediction 130 169 - -
Seca5g04818 325 MobiDBLite consensus disorder prediction 1 46 - -
Seca5g04818 325 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Seca5g04818 325 MobiDBLite consensus disorder prediction 130 159 - -
Seca5g04818 325 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Seca5g04818 325 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04818 Seca-Chr5 105410244 105411221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04818 1 192 AP2-EREBP Transcription Factor Family AT5G18560 46.825 5.79e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g04818 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04818 - - gmx:102664746 426.017