Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04816 ATGTTTGGTTTCTATTGCAGAGCGTTGCTCTGCCCAAACCTCAACCCCGTCGTTAGATTCAGAACCACCTTACCAATCCCAACACCCTCCTCTCTTCTTCTCCCGCAACTTTTTTCCTCTTCCAATGAACACTCTTTTACCATCAATTACTTCGTCAACATTTGTGGCTTCTCCCCAGAAACAGCTTCCAGGCTCTGCAACCGAGTTCATCTCGACAACTCAGACAGGCCCGACTCAGTTCTTGCCTTGTTCAGAAGCCACGGCTTCTCAAACGCTCAATTACTTGGGATCATCCGAACCTGCCCTAAACTTCTCTCTTTCGACCCCAACAAGACCATTCTTCCCAAATTCAATTTCCTTCTCTCAAAGGGTGCTTCAAGTTCCGACCTTGTCCAGATCGTGACCAAGAATCCCAGGTTTCTGTACCTAAGCTTGGAGAATACCATGACCGCGTGTTATGATTTGGTTAAAAGATACACGCTTTCTGATGATTCCACCATGCTCTGCATAAAAGCCTGCGCCTGCATTATTTATTCTAAGAACCCAGCGCAAAATATTCCACTGCTGCTTGAGAATGGGGTCCCTGAATCAAAGATTGATTTTATGCTTCAAAACTGGTCTTACATGGTCATTGTGGATCCTGCTATCTTTAAGAAGGCAGTGGAGGAAATAAAAGAGTTGGGATTCAAACCCAGCTCAGTAATTTTCACTGTAGCACTGCGTGCTAAGCTTATGAGAAAATCCCTGTGGGAAAGGAAGATTGATTTGTATAAGAAATGGGGTTGGTCTCAAGAAGTCTTTCTTTCAACATTTGTGAGGTATCCATGGTGCATGATGGCATCTGAGGAGAAGATTGAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGGAGTCTCTAGTGCTTGCCAAACACCCACAGATTCTTTGTCTGAGTTTGGAGAAAAGAGTTATTCCCAGAGCTTCTGTCTTGCAATTTCTTCAATCCAGAGGTCTGATTAAGGATGCTAAAATGGCCACACCGTTTAAAGTTTCTGAGAAGTTGTTCTTGCAGAAATTTGTGAATTGCTTCAAGGAGGAAGCTTCTCAGCTGTTGAAGCTGTATGAAGAGAAAAGAGATCTTCCAAGATAA 1134 0.4392 MFGFYCRALLCPNLNPVVRFRTTLPIPTPSSLLLPQLFSSSNEHSFTINYFVNICGFSPETASRLCNRVHLDNSDRPDSVLALFRSHGFSNAQLLGIIRTCPKLLSFDPNKTILPKFNFLLSKGASSSDLVQIVTKNPRFLYLSLENTMTACYDLVKRYTLSDDSTMLCIKACACIIYSKNPAQNIPLLLENGVPESKIDFMLQNWSYMVIVDPAIFKKAVEEIKELGFKPSSVIFTVALRAKLMRKSLWERKIDLYKKWGWSQEVFLSTFVRYPWCMMASEEKIEAVMEFWVNHMGWESLVLAKHPQILCLSLEKRVIPRASVLQFLQSRGLIKDAKMATPFKVSEKLFLQKFVNCFKEEASQLLKLYEEKRDLPR. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04816 377 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 Pfam mTERF 81 234 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 Pfam mTERF 183 350 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 Gene3D Transcription termination factor 3, mitochondrial 183 368 IPR038538 -
Seca5g04816 377 Gene3D Transcription termination factor 3, mitochondrial 62 182 IPR038538 -
Seca5g04816 377 PANTHER CGI-12 PROTEIN-RELATED 43 361 IPR003690 GO:0003690|GO:0006355
Seca5g04816 377 FunFam Mitochondrial transcription termination factor-like 145 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04816 Seca-Chr5 105393544 105394677 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g04816 mTERF 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04816 K15032 - gmx:102663105 432.95