Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04815 ATGTTTGGTTACTGTCGCAGAGCCTTGCTCTGCCCAAACCTCTTTCCCATTATCAGATTCAGAACCACCACCTTACGAATCCCAACACCCTCCTATCTTCTTCTCCAATTTTTTTCCTCTTCCAAAGAAGAACACTCTTTTACCTTCAACTACCTCGTTAACAATTGTGGGCTCTCCCCAGAAACTGCTTCCAAAATCTCCAAACAAGTTCATCTCAACAACTCAGACAGACCCGACTCAGTCCTCGCCTTGTTCACAAGCCACGGCTTCTCAAACGCCCATTTACATGGAATCATCCGAACCTGCCCAAAACTTCTCTCTTTCGATCCCAACAAGACCGTTCTTCCCAAGTTCAATTTCCTTCTCTCAAAGGGTGCTTCAAGTTCCGACCTTGTGCAAATCGTGACAAAGAATCCATTCATCCTGTATCAAAGCTTGGAGAATACCATTGCCCCGTGCTATGATTTCGTAAAAAGATTCTTGCTTTCTGATGAGTTCACTTTGTCTTCTGTAAGACGCTGTGCTTGCTTGATTTATTCTAAGTACGTAGCACATAATATTCAACTGCTGCTTGAGATTGGGGTCTCTGAATCAAACGTTGCTCATATGCTTCGTAGTCGGCCATCCCCAGTCACTGAGTCTCCTTCTTTGTTTAAGAAGGCAGTGGAAGAAGTAATGGAATTGGGATTCAACCCCAAGTCAACACTTTTCATTGTAGCAGTGCGTGCTAAGGTTATGAAAGTCACGTGGAAAAGGAAGATTGATTTGTATAATAAATGGGGTTGGTCTGAGGAAATTGCTGTTTCAGCATTTGTCAAGTATCCATGGTGCATGTTGGCATCAAGGAATAAAATTGAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGGATTCTCTGGTGCTTGCCAAATACCCAATACTTCTAATGATGAGTTTGGAGAAAAGAATTATTCCTAGGGCTTTTGTCCTGCAATTTCTTCAATCCAGAGGTTTGATTAAGGATGTAATATTGCTCACACCGTTTAGAGTTACTGAAAATGAATTCTTGCAGAAATGGTGCATGCTGGCATCTGAGAATAAAATTAAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGTTGGAGTTCTTTGATCCTCGCCAAACACCCATTACTAATTACGTTGAGTTTGGAGAAAAGAGTTATTCCAAGGGCTCTTGTCTTGCAATTTCTTCAATCCAGAGGTTTGATTAAGGATGCAAAATCCATCAGTTATTATACAATTATTGAGAAGGAGTTCTTGCAGAAATTTGTAAATTGCTTCGAGGAGGAAGCTTCTCAGCTGTTGAAGCTGTATGATGGGAAAAATTATCTTCCAAGATAA 1368 0.4159 MFGYCRRALLCPNLFPIIRFRTTTLRIPTPSYLLLQFFSSSKEEHSFTFNYLVNNCGLSPETASKISKQVHLNNSDRPDSVLALFTSHGFSNAHLHGIIRTCPKLLSFDPNKTVLPKFNFLLSKGASSSDLVQIVTKNPFILYQSLENTIAPCYDFVKRFLLSDEFTLSSVRRCACLIYSKYVAHNIQLLLEIGVSESNVAHMLRSRPSPVTESPSLFKKAVEEVMELGFNPKSTLFIVAVRAKVMKVTWKRKIDLYNKWGWSEEIAVSAFVKYPWCMLASRNKIEAVMEFWVNHMGWDSLVLAKYPILLMMSLEKRIIPRAFVLQFLQSRGLIKDVILLTPFRVTENEFLQKWCMLASENKIKAVMEFWVNHMGWSSLILAKHPLLITLSLEKRVIPRALVLQFLQSRGLIKDAKSISYYTIIEKEFLQKFVNCFEEEASQLLKLYDGKNYLPR. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04815 455 Gene3D Transcription termination factor 3, mitochondrial 356 446 IPR038538 -
Seca5g04815 455 Gene3D Transcription termination factor 3, mitochondrial 179 355 IPR038538 -
Seca5g04815 455 SMART mt_12 348 377 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 378 412 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 167 196 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 FunFam Mitochondrial transcription termination factor-like 146 355 - -
Seca5g04815 455 Pfam mTERF 355 421 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 Pfam mTERF 181 350 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 Pfam mTERF 82 230 IPR003690 GO:0003690|GO:0006355
Seca5g04815 455 PANTHER CGI-12 PROTEIN-RELATED 354 438 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04815 Seca-Chr5 105385776 105390325 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g04815 mTERF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04815 K15032 - gmx:102663105 367.466