Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04813 ATGTTTGGTTATTATCGCAGGGCCTTGCTGTGCCCAAACCTCAACCCCATCATCAGATTCAGAACCACCTTACCTATCCCAACACCCTCTTCTCTTTTCCTGCAACATTTTTCCTCTTCCAAAGAACACTCTTTTACCTTCAACTACCTTGTAAAAAATTGTGGGTTCTCCCCAGAAACGGCTTCCAGACTCTCTAACCGAGTTCGTCTCAACAACTCAGACAGACCCGACTCGGTCCTTGCCTTGTTCAGAAGCCACGGATTCTCAAACGCTCAGTTATGTGGGATCATCCGAACCAGCCCAAATATTCTTACTTACGATCCCAACAAGACCATTCTTCCCAAGTTCAATTTCCTTCTCTCAAAGGGTGCTTCAAGTTCTGACCTTGTGCACATCGTGACCAAGAATCCCACAGTCCTGCATTCAAGCTTGGAGAATACCATTTCCCCGTGTTATGATTTGGTCAAACGATTCAGGCTTTCTGATGAATCCACTTTGCTCTCTATAAAAGCTTCCCCTTGCTTGATTTATTCTAAGAACCTAACACAAAATATTCAACTGCTACTTGACAATGGGGTCCCTGAATCAAAGGTTGCTCTTTTTTTTCGTGTTCGTAATGGGAGTTACACAATCACTGACCACCATGCTCTGTTTAAGAAGGCAGTGGAAGAAGTAAAGGAATTAGGAATCAACCCCAACAAATCAACTTTCATTGTAGCAGTGCGTGCTAAGATTAAGAAAGAATGCGTGTGGGAAAGGAGGATCAATTTGTATAAAAAATGGGGTTGGTCTGAAGAAAATACTGTTTCAGCATTTGTGAGGTATCCGTGGTGCATGCTGGCATCTGACAATAAAATTGAGGCAGTGATGGAGTTTTGGGTCAACCACATGGGATGGAGTTCTTTGATCCTCGCCAAACACCCATTACTAATTACGTTGAGTTTGGAGAAAAGAGTTATTCCAAGGGCTCTTGTCTTGCAATTTCTTCAATCCAGAGGTTTGATTAAGGATGCAAAATCCATCAGTTATTATACAGTTAATGAGAAGAAGTTCTTGCAGAAATTTGTAAATTGCTTCGAGGAGGAAGCTTCTCAGCTGTTGAAGCTGTATGATGGGAAGAATTATCTTCCAAGATAA 1137 0.4204 MFGYYRRALLCPNLNPIIRFRTTLPIPTPSSLFLQHFSSSKEHSFTFNYLVKNCGFSPETASRLSNRVRLNNSDRPDSVLALFRSHGFSNAQLCGIIRTSPNILTYDPNKTILPKFNFLLSKGASSSDLVHIVTKNPTVLHSSLENTISPCYDLVKRFRLSDESTLLSIKASPCLIYSKNLTQNIQLLLDNGVPESKVALFFRVRNGSYTITDHHALFKKAVEEVKELGINPNKSTFIVAVRAKIKKECVWERRINLYKKWGWSEENTVSAFVRYPWCMLASDNKIEAVMEFWVNHMGWSSLILAKHPLLITLSLEKRVIPRALVLQFLQSRGLIKDAKSISYYTVNEKKFLQKFVNCFEEEASQLLKLYDGKNYLPR. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04813 378 Pfam mTERF 221 351 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 Pfam mTERF 80 231 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 Gene3D Transcription termination factor 3, mitochondrial 169 369 IPR038538 -
Seca5g04813 378 PANTHER CGI-12 PROTEIN-RELATED 41 361 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 SMART mt_12 165 194 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Seca5g04813 378 FunFam Mitochondrial transcription termination factor-like 144 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04813 Seca-Chr5 105372303 105373439 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g04813 mTERF 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04813 K15032 - gmx:102663105 413.69