Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04806 ATGGGTGGGTGTTTTCCTTGTTTTGTATCATCCAACAAGGAGGACAGTGGTAGTGTGGTGAAGGAAGTAGCCAAAAAAGATTCTTTTAAAGAAGCTTCTCTTCCTCAGTCTCATCACCCCAGCAGGGTTAGCTCAGATAAATCAAAATCACGGAGTGTCTCAGATCCTAAGAAGGAAACACCAGTTCCAAAGGATGGCCCAACTGCCCATATTGCCGCACAAACATTTACATTCCGAGAGCTTGCTGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGTGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGCCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGCCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTTTTACATCATCCAAATCTTGTGAACTTGATTGGTTATTGCGCTGATGGCGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCAGCTGGTGCAGCAAAGGGGTTGGAATATTTGCATGATAAGGCAAATCCTCCTGTGATTTATAGAGACTTAAAATCATCCAACATCCTCCTAGATGAGGGTTATCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCTGTTGGCGACAAGACTCATGTATCTACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCCATGACTGGTCAACTAACTCTGAAATCTGACGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACTGGGCGCAAGGCTATAGATAATACACGTGCACATGGAGAGCACAATCTCGTTGCATGGGCACGACCTCTTTTTAAAGACCGTAGGAAGTTCCCCAAAATGGCTGACCCTCTACTTCAAGGGCGATATCCAATGCGAGGACTGTACCAAGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCAGCTACAAGGCCTCTTATTGGAGATGTTGTGACTGCTCTCACGTATCTCGCCTCCCAGACATATGACCCAAATGCAGCCAGTCAGTCTAACAGGGTTGGTCCATCAACCCCTAGGAACAGAGATGACAGAAGAAGCATGGTGGATGGTGTGGATAGCCCAGACCGTGGACGGCTTGGCTCCCCTTCCACCCACAGAAACTCACCTGACTTCAGGAAGAGAGATGGTAGAGATCCAAGTGAGTTGGGCAGGATTGACACTGGTGGTGGGTCAGGGAGAAAATGGGGATTGGATGATTTAGAAAGGCAGGAATCTCAGAGAGACAGCCCTGTAAATACTGGAAGAGCTAGAGAGACTCCAAGGAACCGTGACCTGGACAGAGAACGCGCGGTTGCAGAAGCAAAAGTTTGGGGTGAGAATTGGAGAGAGAAGAAGAGAGCAAATGTCATGGATAGCTTTGATGCAACAAATGAGTGA 1521 0.4629 MGGCFPCFVSSNKEDSGSVVKEVAKKDSFKEASLPQSHHPSRVSSDKSKSRSVSDPKKETPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAASQSNRVGPSTPRNRDDRRSMVDGVDSPDRGRLGSPSTHRNSPDFRKRDGRDPSELGRIDTGGGSGRKWGLDDLERQESQRDSPVNTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANVMDSFDATNE. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04806 506 CDD STKc_IRAK 94 363 - -
Seca5g04806 506 MobiDBLite consensus disorder prediction 42 64 - -
Seca5g04806 506 MobiDBLite consensus disorder prediction 372 477 - -
Seca5g04806 506 Gene3D Phosphorylase Kinase; domain 1 61 164 - -
Seca5g04806 506 MobiDBLite consensus disorder prediction 28 69 - -
Seca5g04806 506 Pfam Protein kinase domain 93 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04806 506 MobiDBLite consensus disorder prediction 385 400 - -
Seca5g04806 506 PANTHER OS07G0668900 PROTEIN 4 374 - -
Seca5g04806 506 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04806 506 FunFam Serine/threonine-protein kinase PBS1 165 380 - -
Seca5g04806 506 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04806 506 FunFam Serine/threonine-protein kinase PBS1 61 164 - -
Seca5g04806 506 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Seca5g04806 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Seca5g04806 506 Gene3D Transferase(Phosphotransferase) domain 1 165 382 - -
Seca5g04806 506 MobiDBLite consensus disorder prediction 415 430 - -
Seca5g04806 506 SUPERFAMILY Protein kinase-like (PK-like) 70 362 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04806 Seca-Chr5 105284840 105292191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04806 4 367 Glycoside Hydrolase AT3G07070 65.499 6.68e-171 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca5g04806 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04806 - - gmx:100814575 952.584