Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04803 ATGGCTAGACCTTCGAAGCCGGAAGTCTCTTCTGACGAAGCACTCTCCAACGCTTCGAGTTCGTCAGAGGAAGAGCAAGTAAATGAACAGATCAACGAAGAAGACGAGGAGGAGCTGGAGGCCGTGGCACGCTCTGCTAGTTCCGGAGACGACGAAGTCGCCGAGGACAATCCTCCGAATTCTGATGACGATCCTGCTTCCGCTGAAGATGGTGACAACGAGGAACAGGATGGAGATGTTGATCCTGAAATTAGCAAGCGTGAGAAGGCTAGATTAAAGGAAATGCAAAAAATGAAGAAGCAGAAGGTTCAGGAGATATTGGATGCACAAAATGCAGCCATTGATGCTGACATGAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAATCGTCATCTCAAAAGAAATCACGGGGAAGGGGTCGGCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATATCTAAAAGAAGAAGAAGATGGTGTAGCAAACACACGTCTAGTGACACAACCATCATGTATCCAAGGAAAAATGAGGGACTACCAACTCGCTGGTCTAAACTGGCTCATAAGATTATATGAGAATGGAATAAATGGAATTTTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTAGGTTATTTGCATGAGTTCAGAGGGATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGCCCTGTTCTGCGTGCAGTGAAGTTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGGGAGGAATTGTTGGTTGCTGGGAAATTTGATGTTTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAATCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAACGAGAATTCCTTGCTGTCCAAAACTATGAGGCTATACAATACAAACTATCGTCTTCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTCCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAAGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTACCACCAAAAAAGGAAACGATTCTTAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAGAGCACTGCTGCAAAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGGCTCCTGAATATAGCTATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTTATTACAAATGCTGGCAAAATGGTTCTTTTGGATAAATTACTTCCTAAATTGAAAGAGCGAGATTCTAGGGTCCTCATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGCGATGCCTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTGTCAACTCGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCCGATGTTGTCATTCTGTATGATAGTGACTGGAATCCACAAGTTGATTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAACAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACAGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAAAAGGTAAAAATGACATTTTACTGTCTTTAG 2208 0.4139 MARPSKPEVSSDEALSNASSSSEEEQVNEQINEEDEEELEAVARSASSGDDEVAEDNPPNSDDDPASAEDGDNEEQDGDVDPEISKREKARLKEMQKMKKQKVQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKVKMTFYCL. 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04803 735 SMART ultradead3 190 382 IPR014001 -
Seca5g04803 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Seca5g04803 735 CDD SF2_C_SNF 495 620 - -
Seca5g04803 735 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Seca5g04803 735 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 97 703 - -
Seca5g04803 735 SMART helicmild6 525 609 IPR001650 -
Seca5g04803 735 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Seca5g04803 735 MobiDBLite consensus disorder prediction 55 79 - -
Seca5g04803 735 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Seca5g04803 735 MobiDBLite consensus disorder prediction 10 26 - -
Seca5g04803 735 Gene3D - 415 707 IPR027417 -
Seca5g04803 735 MobiDBLite consensus disorder prediction 1 97 - -
Seca5g04803 735 MobiDBLite consensus disorder prediction 80 97 - -
Seca5g04803 735 FunFam ISWI chromatin-remodeling complex ATPase CHR11 415 707 - -
Seca5g04803 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Seca5g04803 735 FunFam Chromatin-remodeling complex ATPase 195 410 - -
Seca5g04803 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Seca5g04803 735 MobiDBLite consensus disorder prediction 140 174 - -
Seca5g04803 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 409 IPR027417 -
Seca5g04803 735 Coils Coil 85 112 - -
Seca5g04803 735 Gene3D - 195 410 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04803 Seca-Chr5 105270482 105276511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04803 215 636 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.85e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g04803 SNF2_N 2e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04803 K11654 - gmx:100809750 1290.79