Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04799 ATGGAAGGCTCTGTCATTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAAGCATTATAGGAGAAGATGCAGGATTCGAGCTCCCTGTTGCAATGAGGTTTACTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCATGAACTCGTTCGCCAGGATGTTGAACAAGTTGTTTGTTCGGTTTGTGACACAGAGCAGCCTGCTGCTCAAGTTTGTACTAATTGTGGCGTCAGAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTAATTTGTTTACACATTATGCAGACGGGGAAGCAACAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTTGGTGGACGTGAGAATTATTTCCACTGCAAGAAGTGCGGGTCTTGCTATTCAGTTAGTCTGCGCAATAATCATTATTGTGTGGAGAACTCCATGAGGCATCACTGCCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTACTGTTATGAAATGTGGTCACACAATGCATTGTGAATGCTACCATGAGATGATAAAGCGTGACAAGTACTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAGGGTATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTGATGCCTGATGATTATCGATATAGAAAGGTTTGGATACTCTGCAATGACTGCAATGACACAACAGAAGTTTACTTCCATATTATTGGGCAAAAATGTGGTCACTGCAGTTCTTACAATACTCGTGCAATTGCTCCTCCTGTTCTTCCTCAATGA 828 0.4263 MEGSVIERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLSNPFDRHELVRQDVEQVVCSVCDTEQPAAQVCTNCGVRMGEYFCNICKFFDDDVICLHIMQTGKQQFHCDDCGICRVGGRENYFHCKKCGSCYSVSLRNNHYCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRVWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHIIGQKCGHCSSYNTRAIAPPVLPQ. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04799 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 234 IPR013083 -
Seca5g04799 275 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Seca5g04799 275 Pfam Zinc-ribbon 208 266 IPR039512 -
Seca5g04799 275 ProSiteProfiles Zinc finger CTCHY-type profile. 88 160 IPR017921 -
Seca5g04799 275 FunFam RING finger and CHY zinc finger domain-containing protein 1 232 274 - -
Seca5g04799 275 SMART ring_2 161 203 IPR001841 -
Seca5g04799 275 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Seca5g04799 275 SUPERFAMILY Zinc hairpin stack 89 154 IPR037275 -
Seca5g04799 275 Gene3D - 235 270 - -
Seca5g04799 275 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Seca5g04799 275 SUPERFAMILY RING/U-box 160 211 - -
Seca5g04799 275 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 271 - -
Seca5g04799 275 Pfam Zinc finger, C3HC4 type (RING finger) 161 203 IPR018957 GO:0046872
Seca5g04799 275 ProSiteProfiles Zinc finger RING-type profile. 161 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04799 Seca-Chr5 105247568 105250998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04799 10 274 C2H2 Transcription Factor Family AT3G18290 37.037 5.52e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04799 K10144 - gmx:100812246 558.525