Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04794 ATGGGGTGTGTGTTTGGGAAAGGGTCATCAGCGGAGGAGAGGAGAGAGGAACTGAGAGAAGCTAAAGCAACTGAGGTGTGTGGAGGAGAGGCTCCTCAGAATCAGAATGAGAAGGATAATGAGGTTAGAGGAGAGGAGAAGAGGACAACAAGGCCAAGTGGAGAGAGAAGGAGGCGATCTTCGAAGCCAAATCCGAGGTTGAGCAATCCACCTAACCATGTTCATGGTGAGCAGGTGGCGGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATCAATGGATTGACCCCAAGGAGGGCTGACACATTTGAGAAGCTTGATAAGATTGGACAAGGTACATACAGCAATGTTTACAAAGCCAGGGATACATTAACAGGGAAAATTGTCGCCCTGAAGAAGGTTCGTTTTGACAATTTAGAGCCTGAGAGTGTGAAATTCATGGCCAGAGAGATTCTGATTCTACGTCGTCTGGACCATCCCAATGTTGTCAAACTGGAAGGCTTAGTGACTTCTAGAATGTCATGCAGCTTATATCTTGTGTTTGAATACATGGTGCATGATCTGGCTGGACTTGCTACAAATCCTGCAATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAACTATTTTCGGGGCTGGAACATTGTCACAATCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTCATTGATAATGAAGGAGTTCTTAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCAATGACCAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAATATGGTGTAGGAGTTGACCTCTGGAGTGCTGGCTGCATTGTTGCAGAATTGTTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGGTGGAGCAGCTACATAAAATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCAAAGTTACCACATGCTACCATTTTTAAGCCCCAACAGTCATACAAGCGATGCATAACAGAGACTTTTAAGAATTTTCCCCCATCATCCCTGCCACTAATTGAGACTCTTCTTGCAATTGATCCAGCTGAACGTCTAACTGCCACTGCCGCATTGCATAGTGAATTCTTTACAACAAAACCGTATGCTTGTGATCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGGTTGAGAGCAGCTGGAAAAGCTAATGCTGATGGTGTTAAGAAATCTCGTCCACGTGATCGAGTTGGAAGGGGAATCCCAGTTCCAGAGGCCAATGCCGAACTGCAAGCAAACATTGATAGACGGCGATTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATCCTTTAGGTTCTTCACATCACATGGATCCAGCATTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTCTCACAACCTAAAGCAAATATCCAAACCTGGTCAGGCCCACTGGTAGATCCTGGTGGTATGGGTGCACCAAGGAGAAAGAAGAAACATGGAAGGTGA 1635 0.4569 MGCVFGKGSSAEERREELREAKATEVCGGEAPQNQNEKDNEVRGEEKRTTRPSGERRRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCIVAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCITETFKNFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRDRVGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPAFDPPDVPFSSTNFSQPKANIQTWSGPLVDPGGMGAPRRKKKHGR. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04794 544 ProSiteProfiles Protein kinase domain profile. 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04794 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Seca5g04794 544 SMART serkin_6 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04794 544 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Seca5g04794 544 PANTHER CELL DIVISION PROTEIN KINASE 104 394 - -
Seca5g04794 544 MobiDBLite consensus disorder prediction 471 544 - -
Seca5g04794 544 Pfam Protein kinase domain 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04794 544 MobiDBLite consensus disorder prediction 425 456 - -
Seca5g04794 544 FunFam probable serine/threonine-protein kinase At1g54610 93 188 - -
Seca5g04794 544 CDD STKc_CDK9_like 106 390 - -
Seca5g04794 544 SUPERFAMILY Protein kinase-like (PK-like) 101 396 IPR011009 -
Seca5g04794 544 Gene3D Phosphorylase Kinase; domain 1 94 188 - -
Seca5g04794 544 MobiDBLite consensus disorder prediction 1 77 - -
Seca5g04794 544 MobiDBLite consensus disorder prediction 36 62 - -
Seca5g04794 544 Gene3D Transferase(Phosphotransferase) domain 1 189 429 - -
Seca5g04794 544 MobiDBLite consensus disorder prediction 507 522 - -
Seca5g04794 544 MobiDBLite consensus disorder prediction 425 445 - -
Seca5g04794 544 FunFam probable serine/threonine-protein kinase At1g54610 189 430 - -
Seca5g04794 544 MobiDBLite consensus disorder prediction 9 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04794 Seca-Chr5 105212205 105216930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04794 101 428 Core Cell Cycle Gene Families AT5G10270 52.907 1.73e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca5g04794 Pkinase 3.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04794 K08819 - gmx:100814934 989.949