Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04791 ATGTCAAGGGGAAACAACACCTATGTTGGGAAATTGAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATACCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGTTCAACTAGGCTAGTGAATCTAAAACAAGTTTCACCCAAGGTCCCAACAGGCAACTATCCAGTGGCACACATCTCGTATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTGCCTCTTCAATTGAACCAGGAGGTGTAGCCCCTACGCAGACCGAGTTTTCTCTTAACAACATAGATATGTTTCCCTCATTCCCTTTTTTTCGGTCAAAATCAAACCGTGCCGAAAACTCCCTATCTGGACCCCTTGGTGATCAAAATCAAAAGGATGGGATGCTTGTATTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCGTGGGCGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCCGCAGGATCAGAACATGATAAGATTATCCTACAGTTTGGTAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTATCCCATCTCAGCATTTCAGGCATTTGCGATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 696 0.4454 MSRGNNTYVGKLRSNFLGTKFTIYDTQPPHAGAKITKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASSIEPGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRAENSLSGPLGDQNQKDGMLVLKNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLVASAENGPAGSEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04791 231 Pfam Tub family 1 226 IPR000007 -
Seca5g04791 231 ProSitePatterns Tub family signature 2. 216 231 IPR018066 -
Seca5g04791 231 PRINTS Tubby superfamily signature 57 84 IPR000007 -
Seca5g04791 231 PRINTS Tubby superfamily signature 209 231 IPR000007 -
Seca5g04791 231 PRINTS Tubby superfamily signature 143 160 IPR000007 -
Seca5g04791 231 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Seca5g04791 231 PRINTS Tubby superfamily signature 188 207 IPR000007 -
Seca5g04791 231 PRINTS Tubby superfamily signature 8 32 IPR000007 -
Seca5g04791 231 SUPERFAMILY Tubby C-terminal domain-like 1 231 IPR025659 -
Seca5g04791 231 ProSitePatterns Tub family signature 1. 161 174 IPR018066 -
Seca5g04791 231 Gene3D Tubby Protein; Chain A 1 231 IPR025659 -
Seca5g04791 231 PANTHER TUBBY-RELATED 2 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04791 Seca-Chr5 105195682 105199293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04791 1 231 TUB Transcription Factor Family AT2G47900 77.056 9.90e-127 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca5g04791 Tub 3e-88 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04791 K19600 - gmx:100778346 438.343