Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04781 ATGGAATGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAAATGGAAAACAAGGATTTCACAGGGGCTCGCAAATTTGCACTTAGGGCTCAGCAACTATATCCTGATCTGGAGAATATTGCTCAAATGCTTGTTGTTTGTGATGTGCATTGTTCTGCTGAGCAGAGATTGTATGGTAATGTGATGGACTGGTATAAAATTCTTCAAATTGAGGTGACGGATAATGATGCAACAATTAAGAAGCAATACAGGAAGTTTGCCCTTCAACTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATAGGGGAAGCTCAAAGGGTGCTTTTGGATAGAGAAAAACGATCTTCATTTGACATGAACTTGCGCAGGTTTCCAATGAACAAAACTGCTAATGCTATGCCATCTCATCATCAGCAGAAAGTTCAGACGAATTTTAATCCTGTGATGCAAACCAATATCAGGCCCAGTTTCACAAACTTGAATCCTCAGCAGCAACAACAGTCTAGGCAGCCATCTCAGCAAGGGATTAATGGTGACCGCCCTACTTTTTGGACTGTTTGCTCATTTTGTTCCATGAGATATGAGTATTACAGGGAGGTTTTAAATAGATCTCTTCGCTGTCAAAATTGCAATAAGCCCTTCATTGCATATGAGGTGGATAGGCAAAGTACAACACCGGCAACTAATTCAAGTCAACAAGCTTTTGGCCAGCAGAACTATGGTCCGAATCATGGTGCTTTTAAGGTTGGTGTTGGATCTCAAGGTAATTTGCATACTCACAGGTCCAATAAGGAATCTTATCAGAAAAAAGGCCCTACTTCTAATGTCTCTGTAAAGACAAATGGAAAGACGGGGAGGAAGCGGGTAGCGGAATCTAGTGAAAGTTCTGAATCTATAGGCAGCACTGACTCTGAAGATGATGTGATTTCTGACATTGATGGAATTCCTGATGTTTCTGCTCATAGAAAAGAGCATCCACGTAGATCTACGCGGCAAAAACATCAGGTTTCCTACAAGGAGAATGTGAGTGACGACGATGATGAGTTATTACATCCTTTAAAACAGAGTAAGAGGAGTGGATCACCATGTATCAATGGTGAAAATCATGGGGAGGCAGCTAAAATGAATGGTCAGAATAGTTTGGCTGCTGATCTGAAAGACGCAAATCGGAAGCAAAATTTTAATTCTGAAGAGAGCTTAGAAAATATGAATGTGGAAATTAAGGAGGTGAGAGGAAAAGATTCAGGGGGCAACTCAAAGATAGATGAAGCTTCGGAGCATTCACCCTCGAAATCAACAGATCAACCAGATGTTTTTGTTTGTCCTGATGCAGAGTTCACTGACTTCGACAAGGACAAGAAAGAAGGGTCTTTTGCTGTTGGGCAGATTTGGGCTATTTATGATACAACAGATGGCATGCCTAGATTCTATGCTATAATCAGAAAAGTTCTCTCTCCTGGATTCAAGTTGCGGATAACATGGTTTGAGCCAGATCCAGATGACAATGATGGAATCAACTGGTTAAATGAGGAACTGCCAATTTCTTGTGGGAAATATAAACTTGGTACCACTGAAACCACTGAGGATCGTCCGATGTTCTCTCATCAGATTTTTTGTGAAAATATTGGCCGCTCTACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGTATATGGATGTGGAATCTCTTCGGCAGTATGATTTTGAGTTTGTTGAGATTTTGTCAGATTATGTTGAAGGTGTGGGAGTAGTTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTGAGTCTTTTCTCTCAAATTGTGAAAGGAGGTAATCGCACATTTCAAATTCCATCAGTTGAGTTATTGAGATTCTCTCACAGGGTTCCGTCTTTTAAAATGACTGGTCAGGAAAGAGCAGGTGTGCCAGTAGGATCTTATGAACTTGATCCTGCATCCTTACCGATGAATCTGGAAGAGGTTGTCATTCCTGAAGATTTGGAAGTGAAGGTTAGCCATAGTCCATCTGTTGGGATGAGCTCAAGGTCTTCAGATATTTTGAAATCCACAGTGAAATTGGAGGAAGATGCATCCACTGCCAGGGTTAATTTGGAAAGAAGCAAATCAGCAGAGGAGAACAAGGATCCTATTGATATCGATGATGATAGTGCTCCATCGGCTTCAGTTGCCGAAGCTTTTGAAATTCCAGATCCTATGTTCTTCAATTTTGATGCTGAGAGGTCCATTGAAAAGTTTCAGATTGGTCAGATTTGGGCATTTTATGGTGATGAGGATGGGCTGCCAAAATACTATGGTCAGATTAAGAAGGTTAGGACTAGCCCAGATCTTGAGTTGCAAGTTACTTATCTCACTAACTGCTGGCTACCGGAAAATGTTATTAGATGGCAAGATAAGAATATGCTCATTTCCTGTGGAAGGTTTAAAATCAAAGCAGGCTCTCGTCCCTGTTTTTATAGTAACACATATTCTACATCACATCAGGTGCATACTAGTACTGGCGGTAAGAATAAGGAATACGAAATTTTTCCAAGGAAATGTGAAATTTGGGCATTGTATAGGAAATGGACGACCGAAATCAAGCGATCTGATTTGGAAAGCCAGGAGTATGACATAGTGGAAGTTGTTGAAGAAAATGATTTGTCGATGGAGGTCTTGCTTTTGGAGATGGTAAATGGTTACAATTCAATTTTTAAAGGCAAATCAAATGAACGAGGATCAGCTGTGACATTGACAATCTCTAAGACAGAGTTGCTCAGGTTCTCTCACCTAATCCCTGCTTTCAAACTGACAGAAGAACATGGCAATCTGAGAGGCTTCTGGGAGCTTGATCCGGGAGCAATACCTCTTCATTATTTAGTTACAAATTAA 2934 0.4049 MECNKEEALRAKDIAEKKMENKDFTGARKFALRAQQLYPDLENIAQMLVVCDVHCSAEQRLYGNVMDWYKILQIEVTDNDATIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSSFDMNLRRFPMNKTANAMPSHHQQKVQTNFNPVMQTNIRPSFTNLNPQQQQQSRQPSQQGINGDRPTFWTVCSFCSMRYEYYREVLNRSLRCQNCNKPFIAYEVDRQSTTPATNSSQQAFGQQNYGPNHGAFKVGVGSQGNLHTHRSNKESYQKKGPTSNVSVKTNGKTGRKRVAESSESSESIGSTDSEDDVISDIDGIPDVSAHRKEHPRRSTRQKHQVSYKENVSDDDDELLHPLKQSKRSGSPCINGENHGEAAKMNGQNSLAADLKDANRKQNFNSEESLENMNVEIKEVRGKDSGGNSKIDEASEHSPSKSTDQPDVFVCPDAEFTDFDKDKKEGSFAVGQIWAIYDTTDGMPRFYAIIRKVLSPGFKLRITWFEPDPDDNDGINWLNEELPISCGKYKLGTTETTEDRPMFSHQIFCENIGRSTFKVYPRKGETWALFKNWDIKWYMDVESLRQYDFEFVEILSDYVEGVGVVVAYLAKLKGFVSLFSQIVKGGNRTFQIPSVELLRFSHRVPSFKMTGQERAGVPVGSYELDPASLPMNLEEVVIPEDLEVKVSHSPSVGMSSRSSDILKSTVKLEEDASTARVNLERSKSAEENKDPIDIDDDSAPSASVAEAFEIPDPMFFNFDAERSIEKFQIGQIWAFYGDEDGLPKYYGQIKKVRTSPDLELQVTYLTNCWLPENVIRWQDKNMLISCGRFKIKAGSRPCFYSNTYSTSHQVHTSTGGKNKEYEIFPRKCEIWALYRKWTTEIKRSDLESQEYDIVEVVEENDLSMEVLLLEMVNGYNSIFKGKSNERGSAVTLTISKTELLRFSHLIPAFKLTEEHGNLRGFWELDPGAIPLHYLVTN. 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04781 977 MobiDBLite consensus disorder prediction 401 448 - -
Seca5g04781 977 SUPERFAMILY Chaperone J-domain 61 131 IPR036869 -
Seca5g04781 977 Pfam Domain of unknown function (DUF3444) 747 954 IPR024593 -
Seca5g04781 977 Pfam Domain of unknown function (DUF3444) 447 653 IPR024593 -
Seca5g04781 977 MobiDBLite consensus disorder prediction 278 292 - -
Seca5g04781 977 MobiDBLite consensus disorder prediction 235 250 - -
Seca5g04781 977 Pfam DnaJ domain 67 128 IPR001623 -
Seca5g04781 977 MobiDBLite consensus disorder prediction 235 383 - -
Seca5g04781 977 MobiDBLite consensus disorder prediction 713 736 - -
Seca5g04781 977 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 970 - -
Seca5g04781 977 SMART dnaj_3 66 123 IPR001623 -
Seca5g04781 977 MobiDBLite consensus disorder prediction 713 738 - -
Seca5g04781 977 MobiDBLite consensus disorder prediction 162 187 - -
Seca5g04781 977 CDD DnaJ 67 120 IPR001623 -
Seca5g04781 977 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca5g04781 977 MobiDBLite consensus disorder prediction 412 440 - -
Seca5g04781 977 Gene3D DnaJ domain 65 181 IPR036869 -
Seca5g04781 977 MobiDBLite consensus disorder prediction 341 364 - -
Seca5g04781 977 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca5g04781 977 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca5g04781 977 PRINTS DnaJ domain signature 69 87 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04781 Seca-Chr5 105102303 105108397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04781 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.638 1.29e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04781 - - gmx:100779228 1454.5