Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04776 ATGGCTTCTATATCTGAAATTGCATGGACAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCCCCTTCAGTTTCTACACCTGTTTCTGCAAGGACATATAATGAACAGATTAAGCCACAAAAAGATGCTGTTCGTTCTAAGGTTTCAAGGTCCCTTTCCGTACCTGGACGAAGTGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAACAACAAGATGCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGGTGCCGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTGTGTGATGAAAGAAACACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAACAAGAATTGTGATGTGTGTGGGCAAGAAGTTCAGAATTTACCTGTTACTTTGCTTCGTGTGTCCAGCTCTGTTCAACGACAAAACAGACAGGTGCAGGGTCAGCAGAACCTACATCCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTTCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAAAGAGTATATATGGACATATGCTGCACTTGAGTTTGCACTTGTGGCTATAACTGTGCATCTATTTTATACTATGTTGCATTTGACAGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAGCTGCTATGGGTATCAACTATTTATATATCCAGTATGTCACTTGGAGACTTCAGGTCTCTCATAATGATAACCCAGTATGA 945 0.4042 MASISEIAWTRCTSLPVTPASNLSPSVSTPVSARTYNEQIKPQKDAVRSKVSRSLSVPGRSVVIVRSVSFSTRSEQEQQDANDDQITPVPVEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKNCDVCGQEVQNLPVTLLRVSSSVQRQNRQVQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMLHLTAIYAILLSSVLGFGAAMGINYLYIQYVTWRLQVSHNDNPV. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04776 314 MobiDBLite consensus disorder prediction 19 39 - -
Seca5g04776 314 CDD RING_CH-C4HC3_MARCH 106 153 - -
Seca5g04776 314 ProSiteProfiles Zinc finger RING-CH-type profile. 98 159 IPR011016 GO:0008270
Seca5g04776 314 PANTHER OS02G0165000 PROTEIN 4 310 - -
Seca5g04776 314 SUPERFAMILY RING/U-box 102 156 - -
Seca5g04776 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 161 IPR013083 -
Seca5g04776 314 SMART ringv_2 105 153 IPR011016 GO:0008270
Seca5g04776 314 MobiDBLite consensus disorder prediction 19 43 - -
Seca5g04776 314 Pfam RING-variant domain 106 152 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04776 Seca-Chr5 105059020 105063942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04776 119 214 C3H Transcription Factor Family AT5G59000 29.167 2.67e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04776 - - gmx:100527094 535.798