Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04762 ATGATAAAAGATTGTCCTTCTAGAGCCAGACGACCACGACCTGGATTTTCTGATTCATTTTCAAGTATTGGTTTATTAATTTATTGTTCTGATGAGAGAATGAAAACCATTACCATGTTAGACTTGGCAGCTTTAGAGATTGAGGAGGGAGGCCTACATGAGGAATCTCCTAGAAGTCAAGAGTCTGAAACGCCAAGTTCTAAGGCAAGTACTTCTGATTCTGAGGGTCAAGCAGCTTTAAGAGACAATAACAATAACCAGTGGCGTGGTTTCTTTAAATTACTCAAGAAAGGATCTCAAATGCCCTTCCAAACTTTTCATCCACTTAAAAATGTTCCTAAGCTAACTAGAAGAAAAAGTAAAAGAATCAGGGAGGATCTCATTCCATCTCTCAATTCTCCTGCTCTTCAGTCATCTTTTGACTCTGAGTTTTGCTACTTCAAATCTTCCTGGAAAAATTTCACTCTCTTAGAGATCAAGGCTGCAACCGATGACTTTAGCCATGATAATTTAATTGGGGAGGGAGGCTATGCTGAAGTTTACTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGCTTACAAGGGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCACGTGGACCATCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGAAGCCTGTCATCCATACTTTATGGACCTAGGGAGAAACTGAATTGGAACCTCAGATATAAGATTGCTTTGGGGACTGCTGAGGGCCTTCGCTATCTGCATGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAAGCTTCTAATATACTACTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCCAAGTGGTTACCTGACCAATGGACTCACCACACTGTCTCCAAAGTAGAAGGCACATTTGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTCTATGCTTATGGGGTGCTATTATTGGAGCTCATTACTGGAAGACAAGCTCTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGTTATCTAGTAATAACACCAAAGAGCTTGTTGATCCAATTTTGGCTGGTGCTTATGATGAAGAGCAGATGAAACTTGTAATCTTAACAGCTTCTCTGTGTATAGATCAGTCTTCAATGCAGCGACCACATATGAGCCAGGTGTTACAAATACTAAAAGGTGAAGAAGAAAGCTTGAAAACGATGAAAGAAAGGCAGAAGTCAAAACTTCAGCGTACATACTCTGAAGAACTCTTAGATGCAGAAGAGTACAACTCAACCAAGTTGTTGAATGAGAGGGATCGACACATGGAGACTATTTTAGGCTCCAGTAACTCAATTAAAGAAGAAAGCAATACAAACTAG 1482 0.4022 MIKDCPSRARRPRPGFSDSFSSIGLLIYCSDERMKTITMLDLAALEIEEGGLHEESPRSQESETPSSKASTSDSEGQAALRDNNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDSEFCYFKSSWKNFTLLEIKAATDDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWNLRYKIALGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNTKELVDPILAGAYDEEQMKLVILTASLCIDQSSMQRPHMSQVLQILKGEEESLKTMKERQKSKLQRTYSEELLDAEEYNSTKLLNERDRHMETILGSSNSIKEESNTN. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04762 493 MobiDBLite consensus disorder prediction 51 81 - -
Seca5g04762 493 MobiDBLite consensus disorder prediction 62 81 - -
Seca5g04762 493 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 243 445 - -
Seca5g04762 493 Gene3D Transferase(Phosphotransferase) domain 1 243 459 - -
Seca5g04762 493 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 136 240 - -
Seca5g04762 493 SMART serkin_6 166 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04762 493 ProSiteProfiles Protein kinase domain profile. 166 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04762 493 PANTHER OS08G0249100 PROTEIN 55 465 IPR046958 -
Seca5g04762 493 Pfam Protein tyrosine and serine/threonine kinase 169 430 IPR001245 GO:0004672|GO:0006468
Seca5g04762 493 ProSitePatterns Protein kinases ATP-binding region signature. 172 194 IPR017441 GO:0005524
Seca5g04762 493 Gene3D Phosphorylase Kinase; domain 1 130 240 - -
Seca5g04762 493 SUPERFAMILY Protein kinase-like (PK-like) 146 431 IPR011009 -
Seca5g04762 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04762 Seca-Chr5 104925135 104928801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04762 137 435 Receptor kinase-like Gene Family AT1G53420 40.065 1.89e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca5g04762 PK_Tyr_Ser-Thr 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04762 - - lja:Lj6g3v1915960.1 831.632