Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04753 ATGGCATCATTGGTTGCCAGTGGTAGCAGTCAAATGTCTCCTTCAGTTTCTGTCCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGGGAGCCAAATAAGATTATTCCTTCACCTCAACATGAAAGCTTCAGTTATGAATTCTCTGCTGAAAAATTCGAAATAACCTCAGTTCATGGGCAAGCTACAACTTCTGACCTGTGTAGTGTCAGCCAAGATCATTCTGATGGGTTGAAGCTTGACCTGGGATTGTCTAGCCCTGTAGTTTCATCTGAGGTCAGACTTAGCCAACCTAAGGAGGAACTTGAGTTGGATGAATTACATGATGCTGATTGGAGTGATCTCACAGAAGCCCAGTTAGAAGAACTTGTACTGATCAATTTGGACACCATTTTCAAAAGTGCAATACAAAAAATTGTTGCCTGTGGCTACACTGAAGATGTCGCTACAAAGGCTATCTTAAGGTCTGGCATATGTTATGGATGCAAAGACACCGTGTCTAATATAGTTGACAATGCTTTAGCATTTCTAAGAAATGGCCAAGAGAATGATCCTTCGCGAGAGCACTATTTTGAAGATTTGGTGCAGCTTGAGAAGTATATTTTGGCTGAATTGGTCTGTGTTCTTCGAGAGGTTAGACCATTCTTCAGTATTGGGGATGCAATGTGGTGTTTGTTAATTTGTGACATGAATGTGTCACATGCTTGTGCAATGGATGGTGACACTTTAAGCAGTTTAGGTAGTGATGGTATTACTAATGGTTGTTCTTCTATCCAGACTGAATCACAATCAAAAATAGAAACAAAAGGTCCTGAATTTAGTCTTCCAAGTCCTAGTAAATCATCTCTCTCAGGTTCTCAATATGAAAAATCCCTTGTTGCAGGAAATACTGATTTGAATAACTCCAATAATTCTCAAATTCTTAGTACTGCTGGAACATCTCAATCTCCCCTGGTAGAAGAGAAGTGTTGCAGTGTTAAAAAGGTTCATCCCAGTAGCACCAAGAGAGACTACATTCTTCGACAGAAGTCATTTCATGTGGAAAAAAGTTATTGGACATATGGGTCTAAAGCCTCTTCAAGAGGAGGAAAGCTGAGTGGCTTGAGTGGTTTAATTTTGGATAAAAAACTTAAATCTGTATCAGAATCTACTACCATAAACTTAAAGAGCGCATCCTTAAACATAAGCAAAGCAATGGGAGTTGATGTGACTCAAGACAATCTTAAAGCTGATTTCTCTTCTAATGATGGACCATCTACCCCAACTGCATTTAGCCTGAATTCTACTGATACTATTTCTCAGACAACTGATACCTCATCTTCAGTACATGAAGCAAATGCTATACCTACAGCCAGTAGCCCAAATGCATTATCAGCTACAGATACTGAACTTTCTCTTTCATTGTCTTCAGAAAGCAAGTCTTCTACAACACCTATCCGCTGCAATAATGTGGCACCTAATAATAGTTGTGTGGGGATACCATATGACAAGTCCTTGGGACAATGGATTCCCCAGGATAGAAAGGATGAGATGATTTTGAAGCTAGTTCCAAGGGTTCGGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCAGCCCGTCGGCTGAGTAAAGACAAGGCTGAGCTCAAGACACTAAGGCAAGAGAAAGATGAAGTTGAACGTCTTAAAAAAGAGAAGCAATCTCTTGAGGAAAATACCATGAAGAAGCTTTCTGAGATGGAAAATGCCTTGTGTAAAGCAGGTGGACAGGTGGAACGAGCTAATGCTGCTGTCCGGAAGCTTGAGATGGAGAATACTGCCCTGAGGAAAGAGATGGAGGCTGCTAAGTTACGTGCCGCAGAATCAGCCACAAGCTTTCAAGAGGTCTCTAGGAGAGAAAGGAAGACCCAAATGAAGTTTCAATCATGGGAGAAGCAGAAGTCCTTGTTTCAGGAAGAGCTAACGACTGAAAAACACAAATTGGCACAGCTGCGGCAGGAATTAGAGCAAGCTAAAGTACAAAAGGAGCAAGTTGAGGCTAGACGGCAGCAGGCAACAAAGGCAAAAGAAGAACTTCTCCTGCAGGCCAGTTCTATAAGAAAAGAAAGGGAACAAATTGAGGAGTCAACAAAATCCAAGGAGGATATGATCAAATTGAAAGCAGAGGAGAATCTGCAGAGGTACAGAGATGACATCCAGAAACTTGAAAATGAAATTGCACAACTGAGACTAAAGACGGACTCTTCGAAAATTGCTGCACTGAGAAGAGGAATTGATGGAAGCTATGCCAGTAGCTGTATGGACATGAAAAATGGCTCTGCTCTGGAAGAACCGCGGACCACTTTTATCTCAGAACTTGTTAAAAAGTTAGGTGACTACTCTTTGACAGGGGGTGTGAAACGGGAAAGGGAATGTGTGATGTGCCTTTCTAAGGAGATGTCTGTTGTATTCCTACCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGAGCTTCATGAGAAACAGGGTATGCAAGACTGTCCTTCTTGTAGGAGCCCCATCCAAGAGCGTATTTCTGTCCGTTATGCCCGTACATAA 2604 0.4174 MASLVASGSSQMSPSVSVQEKGSRNKRKFRADPPLGEPNKIIPSPQHESFSYEFSAEKFEITSVHGQATTSDLCSVSQDHSDGLKLDLGLSSPVVSSEVRLSQPKEELELDELHDADWSDLTEAQLEELVLINLDTIFKSAIQKIVACGYTEDVATKAILRSGICYGCKDTVSNIVDNALAFLRNGQENDPSREHYFEDLVQLEKYILAELVCVLREVRPFFSIGDAMWCLLICDMNVSHACAMDGDTLSSLGSDGITNGCSSIQTESQSKIETKGPEFSLPSPSKSSLSGSQYEKSLVAGNTDLNNSNNSQILSTAGTSQSPLVEEKCCSVKKVHPSSTKRDYILRQKSFHVEKSYWTYGSKASSRGGKLSGLSGLILDKKLKSVSESTTINLKSASLNISKAMGVDVTQDNLKADFSSNDGPSTPTAFSLNSTDTISQTTDTSSSVHEANAIPTASSPNALSATDTELSLSLSSESKSSTTPIRCNNVAPNNSCVGIPYDKSLGQWIPQDRKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLSKDKAELKTLRQEKDEVERLKKEKQSLEENTMKKLSEMENALCKAGGQVERANAAVRKLEMENTALRKEMEAAKLRAAESATSFQEVSRRERKTQMKFQSWEKQKSLFQEELTTEKHKLAQLRQELEQAKVQKEQVEARRQQATKAKEELLLQASSIRKEREQIEESTKSKEDMIKLKAEENLQRYRDDIQKLENEIAQLRLKTDSSKIAALRRGIDGSYASSCMDMKNGSALEEPRTTFISELVKKLGDYSLTGGVKRERECVMCLSKEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQERISVRYART. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04753 867 Coils Coil 599 626 - -
Seca5g04753 867 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g04753 867 Coils Coil 543 587 - -
Seca5g04753 867 MobiDBLite consensus disorder prediction 272 292 - -
Seca5g04753 867 Pfam Family of unknown function (DUF6592) 134 244 IPR046527 -
Seca5g04753 867 MobiDBLite consensus disorder prediction 418 485 - -
Seca5g04753 867 MobiDBLite consensus disorder prediction 1 46 - -
Seca5g04753 867 Coils Coil 726 760 - -
Seca5g04753 867 PANTHER OS05G0141500 PROTEIN 11 862 IPR046934 -
Seca5g04753 867 Pfam Zinc finger, C3HC4 type (RING finger) 810 858 - -
Seca5g04753 867 SUPERFAMILY RING/U-box 808 859 - -
Seca5g04753 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 863 IPR013083 -
Seca5g04753 867 CDD RING-HC_MIP1-like 808 862 - -
Seca5g04753 867 Coils Coil 655 717 - -
Seca5g04753 867 ProSiteProfiles Zinc finger RING-type profile. 813 853 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04753 Seca-Chr5 104838092 104841386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04753 813 862 C3H Transcription Factor Family AT1G73950 44.000 3.21e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04753 - - gmx:100818439 1352.42