Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04749 ATGGGCTGTGTCCATGGCAAGTGCTGTAGCCGCTACCCTCCACCTTCAGTGGGTGGCTCCAGGGACTACCGAGAACCTGGTCCTTTTGGACAAAGGAAACACATACTCACTCAGAGATCACTGCACTCTGTTCCTGTCCCTTCTCACAACTTCACTTTGGAATACTCTGTTCTCACTCAGCGGGGATACTACCCTGATTCACCTGATAAGGAAAACCAAGATAGTTTCTGCATTAAGACACAATTTCAAGGTAACCCAAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGTGAATTTGGTGGCCAGTGTTCGAACTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCAAATGACCCTACCTTGTTGGAGGATCCTGTTAAGGCTTACACTTCAGCATTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCCATGAGTGGCACTACTGCAATTACAGTGCTTGTTATTGGAGACACACTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTTGCTGTTAAGGATGGGAATAGAATTGTGGCTGAGGACTTGTCATCTGATCAGACACCATTTAGGAGAGATGAATATGAAAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATCCAAAATTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCGAGATTGTGGGTTCAGGATGGGATGGTTCCGGGAGCTGCTTTTACAAGGAGTGTAGGGGATAGTGTGGCAGAGACTATTGGTGTCATAGCTGTTCCGGAGGTGTCAACAGTGCAGCTTACGCCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTGGAACATGAGGGCCGGACAGATGATATAACGATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGGTACACCTGGATTCGGATCAGGCGAGATCAGTGTCAGTACTGTAACGAGGGCCAAGAAGGGAAAGGGAACTTCTGAGATATCTACTACCACTGGGTTAGATGTTTATCATCCTGTGAGGAATGGTTTCTCTGATTTACAGTCCTGTCAGCATGTGGTCTCAACGAGAAGCCCAGCCTTAGTAGTTCCCTCTCCAGCATGTCAAAGACCAATTGAATTGTGA 1272 0.4528 MGCVHGKCCSRYPPPSVGGSRDYREPGPFGQRKHILTQRSLHSVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIKTQFQGNPSVHFFGVYDGHGEFGGQCSNFVKDRLVENLSNDPTLLEDPVKAYTSAFLATNDDLHKNEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQNWGDEESQGDDPPRLWVQDGMVPGAAFTRSVGDSVAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTPGFGSGEISVSTVTRAKKGKGTSEISTTTGLDVYHPVRNGFSDLQSCQHVVSTRSPALVVPSPACQRPIEL. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04749 423 SMART PP2C_4 50 342 IPR001932 -
Seca5g04749 423 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 49 346 - -
Seca5g04749 423 MobiDBLite consensus disorder prediction 221 239 - -
Seca5g04749 423 ProSitePatterns PPM-type phosphatase domain signature. 90 98 IPR000222 GO:0043169
Seca5g04749 423 Pfam Protein phosphatase 2C 72 319 IPR001932 -
Seca5g04749 423 SUPERFAMILY PP2C-like 41 346 IPR036457 -
Seca5g04749 423 Gene3D - 41 346 IPR036457 -
Seca5g04749 423 ProSiteProfiles PPM-type phosphatase domain profile. 54 344 IPR001932 -
Seca5g04749 423 PANTHER PROTEIN PHOSPHATASE 72 343 IPR015655 GO:0004722|GO:0006470
Seca5g04749 423 CDD PP2Cc 70 344 IPR001932 -
Seca5g04749 423 MobiDBLite consensus disorder prediction 221 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04749 Seca-Chr5 104794763 104799105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04749 1 349 PP2C-type Phosphatase Gene Family AT3G06270 71.309 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04749 - - aprc:113872580 778.859