Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04739 ATGATCGTAGAGGAGCATCCTGTTGGTACTGAACTGGCAATGAACAATGCTGCTGGGGAGGGGGGAATAGATTTTTCTTGTGATCCATACATAGGGTTAGAATTTCATTCAGCAGATGATGCACTTAAATTTTACACATCATATGGTAATCGAATGGGATTTAAAGTCCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGATCGGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGATTTCAGCTCAGCTCAAGAACAGGCTGTCCAGCATTCATAAGGGTACAAATAAATGCTTCTGGAAGGTGGGTTATTGATCATTTTCATAAGGACCACAATCACAATCTTGAAATCAATGGTGAAAATTGCACTCTGACATTGCCACAGAAGGGTGCTCCATCTGTCAATTCTTTTACTGAAGTACCTCGCAGGCCAAGGAAGAAATTTCTTGAAGAAACCAATGATGGGCCCACTTGTCCCTTTGGCGTTATTAATTTCAAGCGCCTGAGAAAGGAGGAACATGAAGGACAGCTGAGGGCTGAACCACATGTGGGTCAAGAGTTTAATTCGCCTAATGAAGCCTACCAATTTTATAATGCATATGCAGCATATTGTGGTTTCAGAATTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGCTGGTTACATCCCGGCGATTTGTGTGCTCAAAAGAGGGCTTCCAGCACCCTTCAAGAGTTGGTTGTAGGGCTTATCTAAGGATTAAGAGACAACCATCGGGAAAGTGGGCAGTAGACCGTCTCCGTAAAGATCATAATCATGATTTGGACTCTGAAAAGGAGGTTGGGGCAAAAAGTCTTCCTGCTTCTAATACTTTGACTGAGGAGGTAAATACTGGATTTGTAAATGGTGACTTATTTAGGATAGATAACTACCCTGTTCCTAGAGGAGCTAGACAAAATCACATTAGAAGTGATTGGTACAGCATGCTTCTAGAATATTTTCAATCAAGACAAGTAGAAGATACAGGTTTCTTTTATGCTGTGGAAGTTGATAATGGTAATTGCATGAGCATATTCTGGGCTGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTTCTTGTTATAGACACATCATATCGAAAAAGTGTCTATTTGGTACCGTTTGCTACTTTTGTTGGAGTCAATCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAGTCTTTCACTTGGTTGCTTCAGACATGGCTGAGGGCAATGTCTGGCCGGCAGCCTCTGTCAGTAATAGCTGATCAAGACATTGTAATCCAGAAGGCAATAGCGAAAGTCTTTCCAGTAACCCATCACCGCTTTTCATTGTGGCAAATTAAGGCAAAGGAACAAGAGAATGTCGGTCTGCTGGGTAATGGGTTTACAAAAGATTATGAAAAGTGTGTTTACCAGAGTCAGGCAGCTGATGAATTTGACACCACTTGGAATGCCCTACTCAACAAATATGGATTGAAGGACAATGGTTGGCTAAGAGAAATGTATGAGAAGCGTGCATCCTGGGTTCCATTATATTTAAAAGGCACATTTTTTGCTGGAATTCCAATGAATGAAAGCGTGGATTCATTCTTTGGTTCACTTTTAAATGCCCAAACACCTCTCACAGAGTTCATTCCACGGTATGAAAGAGGTCTTGAGCGTCGCCGTGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCCTTTTGCAAACAAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTATACTCTTACAGTATTCAAAGTTTTTCAAAAAGAGCTTTTGCAGTGCTATAGTTATCTTGGGTTTAAAATATATGAAGAAGGGGGCCTCAGCAGATATTTGGTGCGTAAGTGTGGAAATGATATGGAGAAGCATGTGGTTACATTTAATGCATCCAATCTCAGCATTAATTGTAGCTGCCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACATGTGTTGAGGGTTTTCCAGATATTGGAATTAAGAGAAGTTCCTTCTCGTTACATCTTACACAGATGGACAAGAAATGCTGAAGATGGTGTTTTTCCTGACATAGAATCATGGAGTAGCTCTCAGGAACTCAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCGTCTAAATACATAGATGCCGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGAGAGGGTGGGAGAAAGCTATGTTGGCACAGGTGA 2283 0.406 MIVEEHPVGTELAMNNAAGEGGIDFSCDPYIGLEFHSADDALKFYTSYGNRMGFKVRIGQLYRSRTDGSVSSRRFVCSKEGFQLSSRTGCPAFIRVQINASGRWVIDHFHKDHNHNLEINGENCTLTLPQKGAPSVNSFTEVPRRPRKKFLEETNDGPTCPFGVINFKRLRKEEHEGQLRAEPHVGQEFNSPNEAYQFYNAYAAYCGFRIRIGQLFRSKNDGLVTSRRFVCSKEGFQHPSRVGCRAYLRIKRQPSGKWAVDRLRKDHNHDLDSEKEVGAKSLPASNTLTEEVNTGFVNGDLFRIDNYPVPRGARQNHIRSDWYSMLLEYFQSRQVEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLVIDTSYRKSVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLLQTWLRAMSGRQPLSVIADQDIVIQKAIAKVFPVTHHRFSLWQIKAKEQENVGLLGNGFTKDYEKCVYQSQAADEFDTTWNALLNKYGLKDNGWLREMYEKRASWVPLYLKGTFFAGIPMNESVDSFFGSLLNAQTPLTEFIPRYERGLERRREEERKEDFNTSNFQPLLQTKEPVEEQCRRLYTLTVFKVFQKELLQCYSYLGFKIYEEGGLSRYLVRKCGNDMEKHVVTFNASNLSINCSCQMFEYEGVLCRHVLRVFQILELREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04739 760 SMART 26again6 657 684 IPR006564 GO:0008270
Seca5g04739 760 Pfam MULE transposase domain 371 464 IPR018289 -
Seca5g04739 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
Seca5g04739 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 122 IPR031052 GO:0006355
Seca5g04739 760 Pfam SWIM zinc finger 653 679 IPR007527 GO:0008270
Seca5g04739 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Seca5g04739 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04739 Seca-Chr5 104695305 104698773 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g04739 MULE 1.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04739 - - gmx:100816656 1367.06