Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04736 ATGGCCAAACTTTGCGTCGGTCTCTTTTTAATCTATCTATCACTGTGTTACTTCTTGGCTTGCTCAGCTTTGAGTAGAAAAAATATCACTACTGATGAATTTGCACTTCTTGCATTCAAATCCTCCGTTACTTTAGACCCCTATCATATGCTTAGTAATTGGTCAACCTCCTCTTTTTCTTTGTGCAATTGGGTCGGTGTCACTTGTGATACGGTCCATGAAAGAGTGAGGGCTTTGGATCTTAGTAACATGGGCCTTGGAGGAACCATTACCCCGCAACTAGGGAATCTATCCTTTCTAGTTCAACTTGACCTCCAAGGTAATAGCTTTTATGGTCAGTTGCCAAACGAGTTATTTGGGTTGCATCGACTGAGGTTGCTTGACTTGAGCAACAATGGGTTTGTTGGAGGAATCCCAACAAGGGTAGGGGACTTACCAAAACTTCAACTTTTAGATCTTAGCCATAATAATCTTACTGGCTTTATCCCCCATTCTATATTCAACTTGTCCAAGTTAGAATACTTGGATTGCTCATTAAATTTCCTCAAGGGAATCATTCCACCTTCCATTGGTCAACTTCGTCAACTGAAGATTTTGGATATTAGAAATAACACGTTGTCGGGAACCATACCACCAACAATTTCCAACCTTTCTTCACTAGAAGCGTTACATTCATCTCATAACTCCTTATCAGGAGAAATTCCAAAAGGAATTGGTGATCTTACTCAACTCAGAATGATGAACCTTCAATATAATCAGCTTTCGGGCAACATATCATCCATGATCTTCAACAGCTCATTGTTGCAATATTTGGCTCTTGGTCAGAATAATCTGTTCGGCAATATTCCATCAAATATTTGTCAAGGCCTTCCAAACCTTAGATTACTTTATCTTTATGCTAATGATATTTCCGGTGAAATGCCGACTCTTTGGCATCAATGTAAAGAGTTGGTAGATTTGGAACTATCCTTCAATAATTTCAACAAAGGACGTATTCCAGGTGACATTGGAAACTTGACCAAGCTTCAATATCTATATCTTCGTAGCAACAACTTGGAGGGTGAAATTCCATTCTCCCTTTTCAACATCTCTTCTTTGAGACAGGTCAACCTTGACAGAAATTACAATTTAAATGGAAGTCTTCCAAATGAGATGTGTGATCAACTTCCTCAACTTGAAATGTTTACTTTACAAGTTAATCAATTGGAAGGAAGCATTCCACGATCAATTGGCAACTGCACATCACTCAAAATGTTAAGTTTTGAGGACAACTTTTTTACAGGTTCAATACCCATGGAGATTGGTAACCTTGATCAACTTGAGATTCTACAATTGGGAAATAACAGCTTGACTGGACCAATTCCTTCAAAACTTTTCAACATCTCAACATTGACATACTTGCGTCTTGCAAATAATTCTCTCACTGGCACTCTTCCATCAGATATGGGGTATGGCCTTCCTAACTTGGAACAACTACACATGTATTCAAACAAACTTATTGGAAACATTCCAAATAGTATATCCAATTCTTCTAAGCTCACTATAGTTGACTTGGGTGAGAATAGATTCAGTGGAATCATACCCAATTCCTTTGGAGATTTAACACTCCTTAAATCACTCCTTATAGCTGGCAATAATTTGACAACATATGATTCCCCTGAATTCAACTTTCTTACTTCATTGACAAGTTGTAGACACTTGACATATCTAGAAGTATCAGGAAATAGTTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCAAAGTCTCTAGAACACTTTGAGGCAAATTCTTGTGGAATTGATGGTGATATTCCACTGGAAGTTGGAAACATGAGCAACCTGATACGTTTATCTTTGAATAGGAATAATATGAATGGACCAATTCCTGCTACAATCAAAGGGTTACAAAAACTTCAAAATTTTGGTCTTGCTTACAATGGACTACAGGGATCCATCATTGATGAGCTTTGTCAAATTAGGAGTTTAAGTCAGTTGTATCTTACAAACAATAAGCTTTCTGGAGTGTTACCAACATGCTTGGGAAATATGACTTCTCTTAGAAAATTATACATAGGATCCAATAAATTGATATTTCAAATACCTTCCTCTTTTTGGAGTTTGAAAGATATCTTAGAGGTAAACTTCTCCTCTAATGCTTTAACTGGAAATCTTCCACTTGAGATTGGGCAGTTGAGAGCTCTTATACTATTGGATCTGTCAGGAAATGAGATTTCAAGCAACATTCCTACAACCATCAGTTTCTTGAAAACTTTGCAGATTCTTTCCTTAGCACAGAACAAATTACAAGGGTCTATTCCCCCATCACTTAGTGAAATGGTAAGCTTGAGCTTCTTGGACTTATCCCAAAATCTTTTATCTGGTGAGATTCCAAAATCCTTAGAGTCACTTGTCTATCTTAAATACATCAACTTTTCATACAATAGATTACAAGGAGAGATTCCAGATGGAGGACCTTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAGGCACTTTGTGGCAATCCTCGCTTACAAGTACCTCTATGTGGTAAACAGGACAAGAGAAAGTCAGTGACAAAAACCCTTTTAATCAAATGCATGCTACCCATAATTGTGTCAATCATTTTGGTTGTTACATGCATAATACTTCTACAACATAAAAGGAAAAAGGTTGAAAATTCAGCTGAAATGGATTTATCAAATTTAGGAGCATTGAGAAGAATTTCCTATTATGAACTCATACAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCTGTGTATCAAGGGATGCTTTCTAGTGGGAAGATAGTTGCAATTAAAGTAATTGATTTGGCTTTGGAAGCAACATCAAAGAGCTTTGATGTAGAGTGCAATGCAATGCGCAATCTACGACATAGAAATCTTGTCAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGAGTTCATGTCTAATGGAAGCCTAGACAAATGGTTATACTCAGATCACTACTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTATTGGATGAAAACATGGTTGGACATGTTAGTGATTTTGGCATTGCCAAACTATTGGATGAAGGACAGTCTAAAACTCATACTGAAACCTTGGCTACTCTTGGCTACATTGCACCAGAGTATGGATCAAAGGGAATTGTTTCTATCAAAGGAGATGTATACAGCTATGGGATTATGCTAATGGAAGTCTTCACTGGAAAGAAGCCAATAGATGGTATGTTTGCAGCAAAGCTAAGCTTGAAAAATTGGATCAATGAGTCAATACCCAATTCAATTATGGAAGTTGTGGATTCCAATTTAGTCCAACAACATGGGGAGCAAATTGATGACATGTTGACTCATATATCATACATTTTGAGTTTGGCCTTAAGTTGTTGTGCAGATTCACCTGAAGCACGATTAAATATGACACATGTCACTGCATCATTAACCAAAATCAAAACCTTGTACACCCAATATTAA 3621 0.3679 MAKLCVGLFLIYLSLCYFLACSALSRKNITTDEFALLAFKSSVTLDPYHMLSNWSTSSFSLCNWVGVTCDTVHERVRALDLSNMGLGGTITPQLGNLSFLVQLDLQGNSFYGQLPNELFGLHRLRLLDLSNNGFVGGIPTRVGDLPKLQLLDLSHNNLTGFIPHSIFNLSKLEYLDCSLNFLKGIIPPSIGQLRQLKILDIRNNTLSGTIPPTISNLSSLEALHSSHNSLSGEIPKGIGDLTQLRMMNLQYNQLSGNISSMIFNSSLLQYLALGQNNLFGNIPSNICQGLPNLRLLYLYANDISGEMPTLWHQCKELVDLELSFNNFNKGRIPGDIGNLTKLQYLYLRSNNLEGEIPFSLFNISSLRQVNLDRNYNLNGSLPNEMCDQLPQLEMFTLQVNQLEGSIPRSIGNCTSLKMLSFEDNFFTGSIPMEIGNLDQLEILQLGNNSLTGPIPSKLFNISTLTYLRLANNSLTGTLPSDMGYGLPNLEQLHMYSNKLIGNIPNSISNSSKLTIVDLGENRFSGIIPNSFGDLTLLKSLLIAGNNLTTYDSPEFNFLTSLTSCRHLTYLEVSGNSLLSKLPKSIGNLSKSLEHFEANSCGIDGDIPLEVGNMSNLIRLSLNRNNMNGPIPATIKGLQKLQNFGLAYNGLQGSIIDELCQIRSLSQLYLTNNKLSGVLPTCLGNMTSLRKLYIGSNKLIFQIPSSFWSLKDILEVNFSSNALTGNLPLEIGQLRALILLDLSGNEISSNIPTTISFLKTLQILSLAQNKLQGSIPPSLSEMVSLSFLDLSQNLLSGEIPKSLESLVYLKYINFSYNRLQGEIPDGGPFKNFTAQSFMHNEALCGNPRLQVPLCGKQDKRKSVTKTLLIKCMLPIIVSIILVVTCIILLQHKRKKVENSAEMDLSNLGALRRISYYELIQATNGFSESNLLGKGSFGSVYQGMLSSGKIVAIKVIDLALEATSKSFDVECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSLDKWLYSDHYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVGHVSDFGIAKLLDEGQSKTHTETLATLGYIAPEYGSKGIVSIKGDVYSYGIMLMEVFTGKKPIDGMFAAKLSLKNWINESIPNSIMEVVDSNLVQQHGEQIDDMLTHISYILSLALSCCADSPEARLNMTHVTASLTKIKTLYTQY. 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04736 1206 ProSitePatterns Protein kinases ATP-binding region signature. 930 952 IPR017441 GO:0005524
Seca5g04736 1206 Gene3D Transferase(Phosphotransferase) domain 1 1000 1205 - -
Seca5g04736 1206 Pfam Protein kinase domain 925 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04736 1206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1043 1055 IPR008271 GO:0004672|GO:0006468
Seca5g04736 1206 ProSiteProfiles Protein kinase domain profile. 924 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04736 1206 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515
Seca5g04736 1206 SMART LRR_sd22_2 145 171 - -
Seca5g04736 1206 SMART LRR_sd22_2 193 219 - -
Seca5g04736 1206 SMART LRR_sd22_2 486 505 - -
Seca5g04736 1206 SMART LRR_sd22_2 781 807 - -
Seca5g04736 1206 SMART LRR_sd22_2 757 780 - -
Seca5g04736 1206 SMART LRR_sd22_2 564 590 - -
Seca5g04736 1206 SMART LRR_sd22_2 733 752 - -
Seca5g04736 1206 SMART LRR_sd22_2 437 463 - -
Seca5g04736 1206 SMART LRR_sd22_2 339 365 - -
Seca5g04736 1206 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 450 1194 - -
Seca5g04736 1206 SUPERFAMILY Protein kinase-like (PK-like) 905 1196 IPR011009 -
Seca5g04736 1206 FunFam Receptor-like protein kinase 7 311 554 - -
Seca5g04736 1206 Pfam Leucine rich repeat 738 794 IPR001611 GO:0005515
Seca5g04736 1206 Pfam Leucine rich repeat 439 499 IPR001611 GO:0005515
Seca5g04736 1206 Pfam Leucine rich repeat 662 722 IPR001611 GO:0005515
Seca5g04736 1206 Pfam Leucine rich repeat 194 254 IPR001611 GO:0005515
Seca5g04736 1206 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 187 - -
Seca5g04736 1206 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1000 1206 - -
Seca5g04736 1206 Gene3D Ribonuclease Inhibitor 456 551 IPR032675 -
Seca5g04736 1206 FunFam Serine-threonine protein kinase plant-type 904 999 - -
Seca5g04736 1206 SUPERFAMILY L domain-like 313 582 - -
Seca5g04736 1206 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 285 - -
Seca5g04736 1206 SMART serkin_6 924 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04736 1206 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 560 857 - -
Seca5g04736 1206 SMART LRR_typ_2 339 363 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 145 169 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 534 557 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 241 265 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 661 684 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 486 510 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 685 709 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 781 805 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 511 533 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 97 121 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 389 413 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 193 217 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 290 313 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 437 461 IPR003591 -
Seca5g04736 1206 SMART LRR_typ_2 733 757 IPR003591 -
Seca5g04736 1206 SUPERFAMILY L domain-like 592 846 - -
Seca5g04736 1206 Gene3D Phosphorylase Kinase; domain 1 906 999 - -
Seca5g04736 1206 SUPERFAMILY L domain-like 42 376 - -
Seca5g04736 1206 Gene3D Ribonuclease Inhibitor 552 862 IPR032675 -
Seca5g04736 1206 Gene3D Ribonuclease Inhibitor 259 455 IPR032675 -
Seca5g04736 1206 Gene3D Ribonuclease Inhibitor 91 258 IPR032675 -
Seca5g04736 1206 Gene3D Ribonuclease Inhibitor 25 90 IPR032675 -
Seca5g04736 1206 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04736 Seca-Chr5 104681587 104686662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04736 584 842 Receptor kinase-like Gene Family AT3G47570 29.502 6.93e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca5g04736 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04736 - K13420 gmx:100784397 1305.81