Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04731 ATGGCTTCCGTTGCTTTTAGAAACCCAAATTCTAAACGCCTTCTTCTCTCTTTCCATTTCATATCTCGCGGAACTTGCACCGTTTCCCAAAACTTCCCGCTCTACAACAATGAACCTCCTTTTTCTCTGCGGAGATCCATGGCCACTTTCACTCGAACAAAGCCCCATCTTAATGTGGGGACCATTGGGCATGTTGATCATGGGAAAACCACACTAACTGCTGCAATTACAAAGGTGCTAGCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACAATTGCTACAGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCGCAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGACCAATGCCTCAAACAAAAGAACATATACTGCTTGCTCGTCAGGTTGGTGTGCCATCACTGGTATGCTTTCTGAATAAGGTAGATGCTGTTGATGACCCGGAGTTACTTGAACTTGTGGAAATGGAGCTTCGTGAACTACTTAATTTCTACAAATTTCCTGGGGATGAGATCCCAATAGTCCGAGGTTCAGCTCTGTCTGCCTTGCAAGGGACTAATGAGGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATATATTTCTGATCCTGTGAGGCAGCTTGATAAGCCTTTCTTAATGCCAGTAGAAGATGTTTTCTCGATTCAGGCAAGCAGAAATATCATATGTGCATCAGAATTATTCTTACTGAAGGATCATATTTATAATGCAATGTCATATATTCTGTTCAGTACTCCTTTAATAACTTGTTCATATTTACTCTACATATGTTGTCAACTGCCTCATGGGTTCATTGCACCATCTTTGATTTATGTGAAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATCAAAGTTGGTGAGGAGGTTGAAGTATTGGGACTAACACAGTTGTGTGCACAGGGTGGACCTGTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGAGGTCTGAAGCGTGATGATGTACAGCGGGGAATGGTTGTGACCAAGCCTGGTGCATTGAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGTCGTCATACTGCTTTCTTCTCTAATTATAGGCCTCAGTTCTACCTTAGGACTGCAGATATTACTGGAAAGGTGGAATTACCTGAGAATGTTAAGATGGTTATGCCTGGCGATAATGTGAGTGCAACTTTTGAGCTGATATCACCTGTTCCTCTTGAACCAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTGGTCTCCAAAGTGATTACCTAA 1512 0.4332 MASVAFRNPNSKRLLLSFHFISRGTCTVSQNFPLYNNEPPFSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPVEDVFSIQASRNIICASELFLLKDHIYNAMSYILFSTPLITCSYLLYICCQLPHGFIAPSLIYVKGRGTVVTGRVEQGTIKVGEEVEVLGLTQLCAQGGPVKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVSATFELISPVPLEPGQRFALREGGRTVGAGVVSKVIT. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04731 503 PRINTS GTP-binding elongation factor signature 102 110 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 PRINTS GTP-binding elongation factor signature 175 184 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 PRINTS GTP-binding elongation factor signature 138 149 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 PRINTS GTP-binding elongation factor signature 122 132 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 PRINTS GTP-binding elongation factor signature 58 71 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 Pfam Elongation factor Tu C-terminal domain 408 501 IPR004160 -
Seca5g04731 503 CDD EFTU_II 326 406 IPR033720 -
Seca5g04731 503 Hamap Elongation factor Tu [tuf]. 45 503 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca5g04731 503 CDD EFTU_III 409 498 - -
Seca5g04731 503 NCBIfam small GTP-binding protein domain 58 195 IPR005225 GO:0005525
Seca5g04731 503 Pfam Elongation factor Tu GTP binding domain 54 247 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 CDD EF_Tu 55 249 IPR041709 -
Seca5g04731 503 FunFam Elongation factor Tu 45 249 - -
Seca5g04731 503 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 95 110 IPR031157 -
Seca5g04731 503 Gene3D Translation factors 447 502 - -
Seca5g04731 503 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 54 250 IPR000795 GO:0003924|GO:0005525
Seca5g04731 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 265 IPR027417 -
Seca5g04731 503 Gene3D Translation factors 320 443 - -
Seca5g04731 503 SUPERFAMILY Translation proteins 316 408 IPR009000 -
Seca5g04731 503 Gene3D - 46 249 IPR027417 -
Seca5g04731 503 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 412 502 IPR009001 -
Seca5g04731 503 PANTHER ELONGATION FACTOR TU-RELATED 49 502 - -
Seca5g04731 503 Pfam Elongation factor Tu domain 2 328 403 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04731 Seca-Chr5 104633749 104637571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04731 52 267 Eukaryotic Initiation Factors Gene Family AT1G07930 32.927 1.26e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04731 K02358 - egt:105953539 657.136