Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04729 ATGCTTCCTGATCAGAGAAAAAAGTCATCTGTGGATGTAGATTTCTTTACTGAATATGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATTCACACACTGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACTCGTATTCTTCGTGAGATTAAGCTTCTTAGACTTTTACGCCATCCGGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGACCTGACACCAGAACATTACCAGTTTTTCCTCTATCAGCTTCTTCGGGGCTTGAAATATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCAAGAGTGGCTTTTAATGATACACCCACTGCTATATTCTGGACAGATTATGTTGCAACAAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCAGCTATAGATATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTGACCGGAAAACCTCTTTTTCCTGGGAAGAATGTTGTCCATCAACTGGACCTCATGACTGATCTTCTTGGAACACCATCTCCTGAAGCCATTGGCAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAGCAAGTTCCTTTCCAACAGAAATTTCCTAATGCAGACCCCCTTGCTCTTCGTTTGTTAGAAAGAATGCTGGCATTTGAGCCTAAGGATCGGCCTACTGCTGAAGAGGCCCTAGCAGATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCTTCTGCTCAGCCAGTTACCAAGATGGAATTTGAATTTGAGAGACGCAGGATAACTAAGGAAGATGTACGAGAACTTATATACCGAGAGATTCTCGAGTACCATCCAAAGATGTTAAAGGAATTTCTCGAGGGAGCAGAGCCAACAGGTTTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGCAAGGGAGGAACTGTTGCTCCACCTGAAAGGCAACATGCATCGTTACCCCGACCATGTGTGTTGTATTCTGATAATTCAGTACACAATAATACGGCTGAGGTTGCTGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACCGCCCGTAGATAGAAGTAGTGCTATCCCCATGACTCGGCTACCTTTACAAGCTCCTCAAAATATTCAAGGTGTTGCTGCAAGGCCTGGAAAAGTTGTTGGTTCAGTAATGCGATACAACAACTGTGGGGTGGCAGTGACAGCAGAGGCTGAACAACGGAGGGTGGTTAGGAATCCATCTGTTTCAGCTCAGTATGCTGCTTCAAGCTGTTCATATCCCAGGAGAAACCCAACCTATAAAAATGAGAGGGCAGAAGATGATGGTGGGATTGAAGGTTCTAATGGATTGCAGCCAAAGCCTCAATACATGGCAAGAAAAGTTGCTGCTGCTCAAGGTGGAGCTGGTGGTAAGTGTCCGTGGACTCTCCCTTTCTCCATGTTTCGAAGGCTCATCTGCTCCTCTCTCTCCCTTCTTCCAATTCCAACCACACTCCCACCAAAAAGGAACAACTTCTCCTTCCCTTTACCTCTTCTCTCCCAAACCCGTTCCTTTCACAACACCAAAATGGGGGATGCTCGGAGGCCCTCATCGGTCCCCATCCCGACGGTGGACAAGGCAGATCGCTCGGAGCTCCTCCGTGCCCTCGAAGCCTCAATGGGTTCGCCCTTCAGCTCCGAACCCCTCTTCTCCAACCCCAACCCTCTCGTCATCGTCATCAGCGGCCCCAGCGGTGTCGGCAAAGACGCTCTCATCTCCCGCCTCCGCGAATCCCGCAGCGGCCTCCACTTCGTCGTCACCGTCACCAGCCGCCCTCGCCGCCCCGGCGAGGTTGACGGCAAGGACTATTTCTTTGTCTCCAAGGACGAGTTCCTTGGAATGGTTGAGAGGGAAGAGCTTCTGGAGTACGCGCTGGTGTATGGGGATTACAAGGGAGTTCCCAAGCAGCAGATTCGGGAGTACATGGCGAAAGGGTGCGACGTCGTTTTGAGGGTTGATATCCAGGGTGCTCAGACGCTGAGGAAGGCGCTGGGGAAGTCGGCGGTTTTCGTGTTCCTTGTGGCGGAGAGTGAGCTGGCGATGGTGGAGAGGCTGGTGGATCGGAATACTGAGACAGCGGAATCGTTGTTGGTGAGGATTAGCACGGCGAGGGAGGAGATGAAACATGTGAAGAACTTTGATTATGTTGTGGTGAATGCGAAAGGGAAGCTTGAGAATGCGGTGCAGTTGGTGGAGTCTATTATTGATGCTGAGAAAGCTAAGGTCCGTCAAAGGACTGCTCTTATATGA 2562 0.4707 MLPDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDSHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSPEAIGRVRNEKARRYLSSMRKKKQVPFQQKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVAPPERQHASLPRPCVLYSDNSVHNNTAEVADDLSKCCIKEVEKPPVDRSSAIPMTRLPLQAPQNIQGVAARPGKVVGSVMRYNNCGVAVTAEAEQRRVVRNPSVSAQYAASSCSYPRRNPTYKNERAEDDGGIEGSNGLQPKPQYMARKVAAAQGGAGGKCPWTLPFSMFRRLICSSLSLLPIPTTLPPKRNNFSFPLPLLSQTRSFHNTKMGDARRPSSVPIPTVDKADRSELLRALEASMGSPFSSEPLFSNPNPLVIVISGPSGVGKDALISRLRESRSGLHFVVTVTSRPRRPGEVDGKDYFFVSKDEFLGMVEREELLEYALVYGDYKGVPKQQIREYMAKGCDVVLRVDIQGAQTLRKALGKSAVFVFLVAESELAMVERLVDRNTETAESLLVRISTAREEMKHVKNFDYVVVNAKGKLENAVQLVESIIDAEKAKVRQRTALI. 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04729 853 FunFam Mitogen-activated protein kinase 111 339 - -
Seca5g04729 853 ProSiteProfiles Guanylate kinase-like domain profile. 659 840 IPR008144 -
Seca5g04729 853 ProSitePatterns Guanylate kinase-like signature. 693 710 IPR020590 -
Seca5g04729 853 Gene3D - 661 832 IPR027417 -
Seca5g04729 853 FunFam Mitogen-activated protein kinase 15 119 - -
Seca5g04729 853 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Seca5g04729 853 CDD GMPK 661 777 - -
Seca5g04729 853 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Seca5g04729 853 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca5g04729 853 Gene3D Guanylate Kinase phosphate binding domain 690 751 - -
Seca5g04729 853 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Seca5g04729 853 FunFam Guanylate kinase 1 690 749 - -
Seca5g04729 853 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 340 - -
Seca5g04729 853 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04729 853 SMART gk_7 658 843 IPR008145 -
Seca5g04729 853 CDD STKc_TDY_MAPK 24 361 - -
Seca5g04729 853 NCBIfam guanylate kinase 661 840 IPR017665 GO:0004385|GO:0006163
Seca5g04729 853 Pfam Guanylate kinase 661 841 IPR008145 -
Seca5g04729 853 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Seca5g04729 853 MobiDBLite consensus disorder prediction 518 543 - -
Seca5g04729 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 845 IPR027417 -
Seca5g04729 853 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04729 853 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04729 Seca-Chr5 104616623 104623985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04729 1 559 MAP Kinase Gene Family AT5G19010 80.492 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca5g04729 Pkinase 1.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04729 - - gmx:100814013 1055.05