LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04728	ATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGCGGGGGAAGCGCCAGGTCATGATTAGGCCATCCTCAAAAGTGATTATTAAATTCCTCTTGGTGATGCAGAAGCATGGGTACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGAAAAATTGTGGTTGAATTGAATGGTAGGCTGAACAAATGTGGGGTTATTAGTCCCCGCTTCGATGTGGGTGTCAAAGAGATAGAAGGATGGACTGCTAGGCTGCTCCCCTCTAGACAGTTTGGGTATATTGTGTTGACTACCTCTGCTGGTATTATGGATCATGAAGAGGCTAGGAGGAAGAATGTTGGTGGCAAAGTGCTGGGTTTTTTCTACTAG	393	0.4555	MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY.	131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04728	130	ProSitePatterns	Ribosomal protein S8 signature.	100	117	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca5g04728	130	Gene3D	-	70	130	-	-
	Seca5g04728	130	Hamap	30S ribosomal protein S8 [rpsH].	2	130	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca5g04728	130	PANTHER	40S RIBOSOMAL PROTEIN S15A	1	129	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca5g04728	130	FunFam	40S ribosomal protein S15a	70	130	-	-
	Seca5g04728	130	Gene3D	-	1	69	-	-
	Seca5g04728	130	Pfam	Ribosomal protein S8	7	130	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Seca5g04728	130	FunFam	40S ribosomal protein S15a	1	69	-	-
	Seca5g04728	130	SUPERFAMILY	Ribosomal protein S8	4	130	IPR035987	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04728	Seca-Chr5	104598728	104601261	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04728	1	130	Cytoplasmic Ribosomal Protein Gene Family	AT5G59850	97.692	1.74e-93	264

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04728	K02957		-	gmx:100798674	261.536