Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04718 ATGATTATCCCAGTATCAGCCTCAGCCTCAGCCTGCAAACAAGAACTGCCCCTAGTAGATTTCCAAAAGGGGCTCCCTATGAAGTCCTTATTTCACCATCGTAATAAGGATAAGGTGATAGTCATAATGGGGGCCACGGGCACCGGCAAGACCAAGTTAGCCATAGACGTGGCCAAACATTTCCAACCAGCAGAGATAGTGAACTCCGATAAAATACAAGTTTACAAAGGTCTTGACATCACAACCAATAAGGTTACAGAAGAAGAGTGTGCTGGGGTCCCACACCATCTCCTAGGAGTAATTGATCCTAACTCAAATTTCACTGCCACTGATTTTTGTCGCCATGCCTGTTCCGCCATCGATTCCATAGTAGAAAGGGATGGTTTACCCATCATTGCTGGGGGTTCCAATTCCTACATAGATGCTTTGGTGAACCACCACCCAGAGTTTCGGTTAAGGTACGAGTGTTGCTTCCTCTGGGTGGATGTTTCACTCCCTGTACTCCATTCCTCACTGCAGGCACGTGTGGATCGCATGATTCAAGCTGGCCAAGTTGAAGAAGTTCGTGAATTCTTCGACCCTTTTGGTGATTACACGAGAGGGATTCGAAGAGCAATTGGGGTGCCTGAATTTGACGATTTTCTAAGAGCAGAGGCAAACGCAGCCGATGAAAGAACCAAAAAGAGGCTTCTTGAGGCTGCCATTGCAAGGATCAAAATCAATAACTGCACGCTAGCGAATCGACAGCTCCAGAAGATTCATCGACTCTACAGCTTGTGGAAAAGGAACATGCACCGTCTTGATGCCACTGAGTCATTCCTGAGAAGGGGTTGTGCCTGTGAGGAAGCATGGGAGAATCATGTGCTTTCAAGGAGCCTCATGATTCTTCACAATTTCCTCTACAAGGGAAAGAACCATTTAATTGTCTCCCCAAAAGATGTAATTGCTGCTGTTTCTTCGCCACCGCCACCGGTAGCATTGCCCGCCGTTGCGGCGGTAACTCGTTAG 1008 0.4742 MIIPVSASASACKQELPLVDFQKGLPMKSLFHHRNKDKVIVIMGATGTGKTKLAIDVAKHFQPAEIVNSDKIQVYKGLDITTNKVTEEECAGVPHHLLGVIDPNSNFTATDFCRHACSAIDSIVERDGLPIIAGGSNSYIDALVNHHPEFRLRYECCFLWVDVSLPVLHSSLQARVDRMIQAGQVEEVREFFDPFGDYTRGIRRAIGVPEFDDFLRAEANAADERTKKRLLEAAIARIKINNCTLANRQLQKIHRLYSLWKRNMHRLDATESFLRRGCACEEAWENHVLSRSLMILHNFLYKGKNHLIVSPKDVIAAVSSPPPPVALPAVAAVTR. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04718 335 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 165 264 - -
Seca5g04718 335 Gene3D - 36 300 IPR027417 -
Seca5g04718 335 Pfam IPP transferase 73 147 - -
Seca5g04718 335 Pfam IPP transferase 152 251 - -
Seca5g04718 335 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 36 299 IPR039657 -
Seca5g04718 335 FunFam Adenylate isopentenyltransferase 5, chloroplastic 165 264 - -
Seca5g04718 335 Hamap tRNA dimethylallyltransferase [miaA]. 39 275 IPR018022 GO:0008033
Seca5g04718 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 196 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04718 Seca-Chr5 104508258 104510275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04718 153 300 C2H2 Transcription Factor Family AT2G27760 33.333 3.52e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04718 K10760 - gmx:100812928 492.656