Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04716 ATGCCCTTTGTAGATGATTACAATGAGTTACCTTTTAGTATAAAAGTAGCTGATGTTCCTTCATTTCCTTGCTTCACCAGACACATCAAAGGAGGGAGATTTCAAAATCCTAACAATGCTTATATTGGTCTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAAAGAAAGCAAGGGGTATAAATTCTGGACTCGAGCTGACACAAAGGGATACTTTGTAATAAATAACATTGTGCCAGGGGATTATAATTTGTATGCTTGGGTCCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGAGGAGTCATCAAATTGGATACACACCATCTAAATACATGA 357 0.3922 MPFVDDYNELPFSIKVADVPSFPCFTRHIKGGRFQNPNNAYIGLALPGEAGSWQKESKGYKFWTRADTKGYFVINNIVPGDYNLYAWVPGFIGDYRYNATITITPGGVIKLDTHHLNT. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04716 118 Gene3D - 32 114 - -
Seca5g04716 118 CDD RGL4_M 24 111 IPR029413 -
Seca5g04716 118 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 113 - -
Seca5g04716 118 Pfam Polysaccharide lyase family 4, domain II 38 110 IPR029413 -
Seca5g04716 118 SUPERFAMILY Starch-binding domain-like 58 113 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04716 Seca-Chr5 104459426 104461034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04716 24 116 Polysaccharide Lyase AT4G37950 56.989 2.74e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04716 K18195 - gmx:100776664 157.918