Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04713 ATGGATAAAGATAAAGCCCCACAAATCCCCCGAAGAACGACCAGGTCTTTAGCATCATGTTCAGCATCCACTTCAAATAATGTACCTGCAGCAAAAGTGAATAGCCCTGAACCTCTAACAGTTAATGACCTTTTAGTTGGAGGAGGTCCCATTAGCCTAGATGGTATAATTTCCAGTTTTCCTGGTAGGAGAAGCCAGATTCTTGAGATTGTGCGTTTTTTGGGTCCTTTGAACTCACCAATGCCTCCTTTGTTTGTATATGGAGGTGCATCTACTGGAAAAAGCAGTATCCTTCTTCAATTATTCAGACATCTAAACAGACCTCTTGTTTATTCTAGTTGTAAGACATGTTATAACCAACGTATCTTGTTTGAGTCTATACTAAATCAGTTACTTCTCCATAGAAAAAATTCTTCCAATGGTTATTCAAATGCAAAGCGCTGTGAAAGACCATCTGATTTTGTCAATTTTCTTCGAGAAGCATTGACCAATGTTATAAACAATCTGAAGGAGAATTCGGAGAAGTTGATCTCAAATAATATGGTACATGGGGGAATTGGAAATATGATCTACTTGGTATTTGACAATTTTCATCTTGTTAGGGAATGGGATAAGAGCTCTACTATAGTTCCCTTTCTTTTTAATCTCCATGATCTGCTAAAGATGCCTGAGGTGGGTCTGATTTTTATCAGCAGTACGTCCCCAGATACCTTTTACACTAACATGGGCTATGTGGAGCCTATCCCCATTCACTTTCCTGATTACGCAGAAGGTGATATTCGTCAAATATTATTGAGAAATGAAGCGAACCATAAGTTGTATTCCTCATTTCTGGATGTAGCTCTGAGGCCTTTCTGTAGAATTACCAGGCAGGTTGGTGAATTGTCCACCTCCTTAAAACCACTATTTGAAAAATACTGTGAACCTTTAAGTGATAAGGGAGTTGTTCCCAGTGAAGACATGAAGCGAAGACTATTCAATCATATCAAGCCTCATATTGCCTCCTCTCTGAAAGAGATATTTAAGGTTTCATCTCCTCCTTCAACTGAAGTTGAGACTTGTAAAGAGACAAAGTGGAAGGGGAATTCCAAGAGATTGGAGAAATCTGAAGAATTTGGTGATCTAGATTTTCATATGTCTACTAGTGCAAAGTATCTTCTTATTTCAGCGTTTCTTGCCTCAAGAAATCCAGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGCTCTGATAATCGAAAGCGAAAGAGGAAGCCCTCCGAGAAAGTTCTGGAACAGAAGGAAAGTTTAGAAGAGGAATTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGTTAGCCATCTTTCAATGTATTGTATCAGTTGCAGAAGAGCCATGTGATGAGGAGGAACAAAACAATGATGGATTAGGAGTTCAATGTGGCAATGTTGGACTGATGTCTGACATTCTTTTGCAGCTATCCAGTCTCTGCAATGCTAATTTTATATTCAAAGGAAAAAGCTGTCCAATAGAAGGCTCAACTCGGTATCGATCAACTATATCTGAAGACCTGGCTTTGAAGGTTGCAAGGAGCCTTAAGTTCCCGTTATCAAAGTATTTATATAGAAGATAG 1623 0.39 MDKDKAPQIPRRTTRSLASCSASTSNNVPAAKVNSPEPLTVNDLLVGGGPISLDGIISSFPGRRSQILEIVRFLGPLNSPMPPLFVYGGASTGKSSILLQLFRHLNRPLVYSSCKTCYNQRILFESILNQLLLHRKNSSNGYSNAKRCERPSDFVNFLREALTNVINNLKENSEKLISNNMVHGGIGNMIYLVFDNFHLVREWDKSSTIVPFLFNLHDLLKMPEVGLIFISSTSPDTFYTNMGYVEPIPIHFPDYAEGDIRQILLRNEANHKLYSSFLDVALRPFCRITRQVGELSTSLKPLFEKYCEPLSDKGVVPSEDMKRRLFNHIKPHIASSLKEIFKVSSPPSTEVETCKETKWKGNSKRLEKSEEFGDLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKVLEQKESLEEELLMKGPGTFPLERLLAIFQCIVSVAEEPCDEEEQNNDGLGVQCGNVGLMSDILLQLSSLCNANFIFKGKSCPIEGSTRYRSTISEDLALKVARSLKFPLSKYLYRR. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04713 540 FunFam Origin of replication complex subunit 5 60 241 - -
Seca5g04713 540 MobiDBLite consensus disorder prediction 408 425 - -
Seca5g04713 540 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 537 IPR047088 -
Seca5g04713 540 Gene3D - 60 240 IPR027417 -
Seca5g04713 540 MobiDBLite consensus disorder prediction 1 34 - -
Seca5g04713 540 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 52 539 IPR020796 GO:0000808|GO:0005634|GO:0006260
Seca5g04713 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 323 IPR027417 -
Seca5g04713 540 Coils Coil 159 179 - -
Seca5g04713 540 MobiDBLite consensus disorder prediction 403 425 - -
Seca5g04713 540 MobiDBLite consensus disorder prediction 12 33 - -
Seca5g04713 540 Pfam AAA ATPase domain 60 217 IPR041664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04713 Seca-Chr5 104419331 104426410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04713 3 540 Core DNA Replication Machinery Family AT4G29910 59.369 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04713 K02607 - gmx:100782175 877.085