Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04709 ATGGGTATTTCCTGGAGCAGCAGAAGAAGAAACAATTTTATTCAGAATCAGAACCCACCCCCTCTTCCACCCCCTTACTATTACTCTGCTGAATCCCACCCTCCACAGCCACCACCGCCTCCGCCTCCGCCGCAAGGTTACTTCTTTCCCTCAACAACCCCTTATACCCCACACTGTACTAGCTATGTCTCTCCCCCTCCTTTACCCCCACCTCAGGCCCATTCCTACTACTATTCTAACCCCAATGGCTATGGCTATGGCTATGGCTATGGCGTGGGTCGCGTTCATTATCACCCTTTCTATGTGAATCAACATGGTTGGGCTCCACCTCGCCCTTGTGCTGCTCCTCCCTCCAACCCACCACCCTATGTCGACCATCAAACTGCTAAGAAGATCAGAAACTATGTCAATGTCCACAAAGACACCTTGCGCCTTGAGGTTGATGAGCACAACCCTGATCACCACCTCCTTACCTTCGTTTTTGATGCTGTTTATGATGGCAGCATAACTATCTTCTACTTTGCCAAGGAAGAAGAGAAATGTAGGTTTGTTCCACTATATCCTGATGCATTTGAGCCGGTCAGGATTCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACATGTTTGAAAACTCCCTCAGCAGCCGAAACTCCTGATGATTCCATGCTCGACGCATCCCCTCACATGCAAGTAACTCAAGGTGTCCTAGAGAAAAGTAATGGTAGTGGTCCTTTCCAGATAAAAGTAGTTAGGCAGATTCTGTGGATTGACGGTGTTCGTTATGAGTTGAGAGAATTATATGGAATTGGAAGCTCAGCAGCAACAGATTTTGATGACAGTGATCCTGGCAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACTGCTGTGTTACCTTGTCGGCATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGATGAACAATGGCGATCAATGA 1131 0.466 MGISWSSRRRNNFIQNQNPPPLPPPYYYSAESHPPQPPPPPPPPQGYFFPSTTPYTPHCTSYVSPPPLPPPQAHSYYYSNPNGYGYGYGYGVGRVHYHPFYVNQHGWAPPRPCAAPPSNPPPYVDHQTAKKIRNYVNVHKDTLRLEVDEHNPDHHLLTFVFDAVYDGSITIFYFAKEEEKCRFVPLYPDAFEPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETCLKTPSAAETPDDSMLDASPHMQVTQGVLEKSNGSGPFQIKVVRQILWIDGVRYELRELYGIGSSAATDFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKMNNGDQ. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04709 376 SMART ring_2 321 359 IPR001841 -
Seca5g04709 376 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Seca5g04709 376 MobiDBLite consensus disorder prediction 17 49 - -
Seca5g04709 376 MobiDBLite consensus disorder prediction 1 49 - -
Seca5g04709 376 Pfam Zinc finger, C3HC4 type (RING finger) 319 365 - -
Seca5g04709 376 SUPERFAMILY RING/U-box 320 366 - -
Seca5g04709 376 CDD mRING-HC-C3HC5_MGRN1-like 319 360 IPR045195 -
Seca5g04709 376 PANTHER MAHOGUNIN 1 371 IPR045194 GO:0061630
Seca5g04709 376 MobiDBLite consensus disorder prediction 1 16 - -
Seca5g04709 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 371 IPR013083 -
Seca5g04709 376 FunFam probable E3 ubiquitin-protein ligase LOG2 305 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04709 Seca-Chr5 104399434 104404148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04709 93 376 C3H Transcription Factor Family AT3G06140 59.259 8.31e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04709 - - gmx:100786054 534.258