Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04691 ATGTTTCTTTTTCAATTCCAGGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCCATATGTTGGCAATTACTTGCCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAAGATCAAGAAACATATATCCATCTTCATTCACACATTCCCGTGTCCCCCTTGAACGGCTTAACGATGACCATGAGGATTCTTGCTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCTCGTTTTGTTCACAGACAGGAAAGGCAGGGATCGTCTGCAGCAGGTCCATCAGAGGTTCTTGTTTTTAACTCTTCTGTGCATGTGTCTGGGGTGCAACCAACTCTTACAACTTCACCATCTGGGGATAATTCACCAACTTCTGGTGTACCTCAACTTCAAACATCTTCTTTTTCCCCTATTGTTGATGAGGTTGCAAGAAATACTACTCCTGAGACTGATGTCCCTTACAGACCCAGAGTTCTCTATACCCAACCACCAACTGAGAGTGCAAGGAGACTAAACACTTCTGAGATGCTCTCCTTCCCTGAGTCCATCAAATCCAAATTTTCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCAAAAAGTACCCGTGGCCTTAAAGAGAAGTTACTTGCTCATAATGCCTCAGTAAAAGAGCTTAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTAACATCAAAAAGGTCCAATTCTCCTCTCATTCCCATCCGTACTGGGGGAACTTCAGGCTTTCCTGAAGAAGGCAAGTATGTTGAAGAGAATGGCATTGGTGGGATTGGGCATTCACATAGTGAAAAGAGTGGAAATGTGGTTCATGATGTTAGTTCAGATGCTCCTTCCCTTGTTTCTAGCATGGTTGCTGGTCGAATGGAAATTCCTCCATGTGTTCAGAGTCAGAGTGGACATGATGCTGTGAAGACATAG 1074 0.4385 MFLFQFQVTCCKHEYHLHCILEWSQRSKECPICWQLLALKDPASQELLAAVEAEKRLRSRNIYPSSFTHSRVPLERLNDDHEDSCSDDSDFDEQIMQHLVAAASRARFVHRQERQGSSAAGPSEVLVFNSSVHVSGVQPTLTTSPSGDNSPTSGVPQLQTSSFSPIVDEVARNTTPETDVPYRPRVLYTQPPTESARRLNTSEMLSFPESIKSKFSKFSAASARYKESISKSTRGLKEKLLAHNASVKELSKGVQREMNAGIAGVARMIERLDLTSKRSNSPLIPIRTGGTSGFPEEGKYVEENGIGGIGHSHSEKSGNVVHDVSSDAPSLVSSMVAGRMEIPPCVQSQSGHDAVKT. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04691 357 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 42 - -
Seca5g04691 357 SUPERFAMILY RING/U-box 7 40 - -
Seca5g04691 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 62 IPR013083 -
Seca5g04691 357 MobiDBLite consensus disorder prediction 137 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04691 Seca-Chr5 104188697 104191189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04691 8 41 C3H Transcription Factor Family AT5G38895 44.118 2.20e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04691 K19043 - gmx:100785684 412.149