Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04681 ATGAGTTGCTTCCCATGTTGCAATTGCAATAAGTCAGATGTTGAATCGCCTTCTTACAGAGCAAGCGCTAGGAAAATTTCCAAAGGCAGGAGAACATTCAAATCCTTGGCAGCGGCTATGTCACTTAAATCAGGTAGCAGCAGGCATAGACAAATTAATGCAGAGTTACTAAAATATGGAGCTGCAAAAAATGATGTTAAAATATTCACATATGAAGAACTCGTTGAAGCAACAAAAAACTTCAGTCCTGATTGCCTGGTGGGTGAAGGTGGATTTGGGAATGTCTATAAAGGATACATAAAGAGCATTGATCAAATAAATATACTTGTGTTCATTCAGACCGTAGCTGTGAAGCAACTCAACAGGGAAGGAGCTCAAGGATCACGAGAATTTTTTGCAGAGGTTTTGATGTTAAGCATGGTTAAGCACCCAAACCTGGTCAGGTTAGTTGGTTATTGTGTAGAAGGTGATCAAAGGATTTTGGTTTATGAGTTCATGGCCAATGGGAGTTTGGAAAGTCACCTTCTAGACTTAGGTAAAGACAAGGAGCCTTTGGATTGGCAGACAAGGATGAAAATAGCTGAGGGAGCAGCTAGAGGGCTTGAATATCTGCATAACAATGCAGATCCACCAGTGATATTCCGTGATTTCAAATCATCTAATATACTCTTAGATGAAGATTTCACTCCAAAGCTCTCTGATTTTGGACTCGCTAAGATTGCTCCATCAGAGGACCAAGAGTTTGTCAAAACAAGGGTGATGGGAACCTATGGCTACTGTGCACCTGAATATGCTGCTACGGGTCAGCTAACCTCAAAATCAGATATTTATAGTTTTGGAGTTGTGTTTCTGGAAATCATCACAGGTAGGAGAGTAATTGACACTGCAAGAGCTACAGAAGAACAAAACTTGATTGATTGGGCACAACCTTTGTTCAAGGACAGAACCAAGTTTGCTCTGATGGCTGACCCTTTGCTTAAGGGTCAGTTCCCTGTGAAGGGTTTATTTCAAGCTCTGGCAGTGGCAGCAATGTGTCTTCAAGAGGAAGCTGACACACGACCTTTCATGGATGATGTTGTAACGGCTCTTCAGCACCTAGCAATACACAGAGTTGAAGAAAAAGACATTGCTGGTGAATCTGTAAAAATTGCTGGACATGTTGAATCTTTTAGAGCTATGAGTTCAATGGGATCTGAAAGGGCGTAG 1206 0.4146 MSCFPCCNCNKSDVESPSYRASARKISKGRRTFKSLAAAMSLKSGSSRHRQINAELLKYGAAKNDVKIFTYEELVEATKNFSPDCLVGEGGFGNVYKGYIKSIDQINILVFIQTVAVKQLNREGAQGSREFFAEVLMLSMVKHPNLVRLVGYCVEGDQRILVYEFMANGSLESHLLDLGKDKEPLDWQTRMKIAEGAARGLEYLHNNADPPVIFRDFKSSNILLDEDFTPKLSDFGLAKIAPSEDQEFVKTRVMGTYGYCAPEYAATGQLTSKSDIYSFGVVFLEIITGRRVIDTARATEEQNLIDWAQPLFKDRTKFALMADPLLKGQFPVKGLFQALAVAAMCLQEEADTRPFMDDVVTALQHLAIHRVEEKDIAGESVKIAGHVESFRAMSSMGSERA. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04681 401 FunFam Serine/threonine-protein kinase CDL1-like 52 165 - -
Seca5g04681 401 SUPERFAMILY Protein kinase-like (PK-like) 65 364 IPR011009 -
Seca5g04681 401 ProSitePatterns Protein kinases ATP-binding region signature. 87 118 IPR017441 GO:0005524
Seca5g04681 401 Gene3D Transferase(Phosphotransferase) domain 1 166 385 - -
Seca5g04681 401 PANTHER OS07G0668900 PROTEIN 3 374 - -
Seca5g04681 401 CDD STKc_IRAK 87 366 - -
Seca5g04681 401 ProSiteProfiles Protein kinase domain profile. 81 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04681 401 Pfam Protein tyrosine and serine/threonine kinase 87 297 IPR001245 GO:0004672|GO:0006468
Seca5g04681 401 FunFam Serine/threonine-protein kinase PBS1 166 381 - -
Seca5g04681 401 Gene3D Phosphorylase Kinase; domain 1 41 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04681 Seca-Chr5 104075870 104078344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04681 67 367 Glycoside Hydrolase AT3G07070 63.123 4.39e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca5g04681 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04681 - - gmx:100305361 634.024