Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04673 ATGATGCAGCCTGGACCTGGCATGGCTCCACCCACCATGGGGCAGCAGCCGCCACAGCAGTACCAGCAGCCGCAGCAACCGCACTACGCCATGATGCCGCCGCAGGCTCAGGCGCAGCCTCCCATGTGGGCCCCCTCCTCCCAGCCTCCGCAGCAGCCCGCCAGCGCCGATGAGGTTCGTACCCTCTGGATCGGCGATCTGCAGTACTGGATGGACGAGAACTACATCTATACCTGCTTCGCTCACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTGCTCAATCGGAAGGTTATGGGTTTATCGAGTTTAACAGTCGTGGTGCTGCGGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCGAACGGTGGGCAGAACTTCAGGTTGAATTGGGCGACTTTCAGTGCTGGAGAAAGGCGCCATGATGATACTCCTGATTACACCATATTTGTTGGTGACTTGGCTCCGGATGTTACTGATTATCTCCTTCAGGAGACGTTCAGGGCTCGTTATAACTCCATGAAGGGAGCCAAAGTCGTGATTGATAAGCTCACAGGCCGTTCTAAGGGTTATGGCTTTGTGAGGTTTGGAGATGAGAGTGAGCAAATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGGATTGGACCTGCCACTAATAAAAACCCTGCCACTCAGCCTAAAGACGCAGCTTCATATCAGAACCCTCAAGGCACACAAAATGGGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTAAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGATTTGTCCAATTTTCTGACAGGAGCTGTGCAGAAGAGGCACTGCAAATTTTAAATGGGACGCTGTTGGGTGGACAAAATGTTCGTTTGTCTTGGGGACGTAGTCCTTCAAACAAACAGTTTGAATGCTTTGTTTCTCAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGACATTATGGATATGCTCAGGGTTATGAAAATTATGGTTACCCCCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATGCGGGTTACCAACCACCACAGCAACAGCAGCAAATGGGATATAGTTGA 1203 0.4971 MMQPGPGMAPPTMGQQPPQQYQQPQQPHYAMMPPQAQAQPPMWAPSSQPPQQPASADEVRTLWIGDLQYWMDENYIYTCFAHTGEVTSVKVIRNKQTAQSEGYGFIEFNSRGAAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDTPDYTIFVGDLAPDVTDYLLQETFRARYNSMKGAKVVIDKLTGRSKGYGFVRFGDESEQMRAMTEMQGVLCSTRPMRIGPATNKNPATQPKDAASYQNPQGTQNGNDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRSCAEEALQILNGTLLGGQNVRLSWGRSPSNKQFECFVSQAQADPNQWNGGGHYGYAQGYENYGYPPAGQDPNMYGSYPGYAGYQPPQQQQQMGYS. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04673 400 Gene3D - 144 239 IPR012677 -
Seca5g04673 400 MobiDBLite consensus disorder prediction 227 261 - -
Seca5g04673 400 MobiDBLite consensus disorder prediction 224 261 - -
Seca5g04673 400 SUPERFAMILY RNA-binding domain, RBD 148 238 IPR035979 GO:0003676
Seca5g04673 400 SUPERFAMILY RNA-binding domain, RBD 24 141 IPR035979 GO:0003676
Seca5g04673 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
Seca5g04673 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 332 IPR000504 GO:0003723
Seca5g04673 400 SMART rrm1_1 261 328 IPR000504 GO:0003723
Seca5g04673 400 SMART rrm1_1 61 136 IPR000504 GO:0003723
Seca5g04673 400 SMART rrm1_1 154 228 IPR000504 GO:0003723
Seca5g04673 400 CDD RRM1_SECp43_like 61 141 - -
Seca5g04673 400 CDD RRM2_SECp43_like 152 231 - -
Seca5g04673 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 325 IPR000504 GO:0003723
Seca5g04673 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 127 IPR000504 GO:0003723
Seca5g04673 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 218 IPR000504 GO:0003723
Seca5g04673 400 Gene3D - 10 143 IPR012677 -
Seca5g04673 400 FunFam Polyadenylate-binding protein RBP45C 237 341 - -
Seca5g04673 400 FunFam Polyadenylate-binding protein RBP45C 145 236 - -
Seca5g04673 400 Gene3D - 240 339 IPR012677 -
Seca5g04673 400 MobiDBLite consensus disorder prediction 14 32 - -
Seca5g04673 400 FunFam Polyadenylate-binding protein RBP45 10 144 - -
Seca5g04673 400 MobiDBLite consensus disorder prediction 380 400 - -
Seca5g04673 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 140 IPR000504 GO:0003723
Seca5g04673 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 336 - -
Seca5g04673 400 MobiDBLite consensus disorder prediction 1 57 - -
Seca5g04673 400 SUPERFAMILY RNA-binding domain, RBD 246 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04673 Seca-Chr5 104029375 104032712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04673 61 340 Eukaryotic Initiation Factors Gene Family AT2G23350 26.667 5.20e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04673 - - aprc:113864230 619.772