Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g04656 | ATGGCTGAGGCTGCACAATCTAATGCTGAGTTGTTGGAATGGCCAAAGAAAGATAGGCGCCGCTTCCTGCATGCTGTGTACCGTGTTGGTGATCTTGATCGCACCATCAAGTTTTATACTGAATGTTTTGGAATGAAGCTTTTGAGGAAAAGAGATGTTCCGGAAGAGAAATACTCCAATGCTTTTCTTGGATTTGGCCCTGAACAATCCCATTTTGTTGTGGAATTGACTTATAATTATGGGGTGACATCATATGATATTGGAACTGGCTTTGGACATTTTGCTATTGCAACTCCAGATGTTTACAAATTGGTTGAAGACATCCGGGCTAAGGGTGGAAACATCACTAGGGAGCCTGGTCCAGTTAAGGGTGGGACATCTGTTATTGCCTTTGTGAAGGATCCTGATGGTTACGCTTTTGAGCTCATTCAAAGAGCTTCAACCCCTGAGCCATTGTGCCAAGTAATGCTTCGCGCTTTGGGTTTGAAGTTGGTAAAGAAGGTTGATAGGCCTGAACACAAGTACACTATAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGACATATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGTGCTGAGGTAGTCAACATAGTCACACAAGAACTTGGAGGAAAGATTACTTGGCAACCAGGTCCAATTCCTGGCCTTAACACAAAGATCACTTCTTTCTTAGATCCAGATGGATGGAAAACTGTTTACAAATTGGTTGAAGACATCCGGGCTAAGGGTGGAAACATCACTAGGGAACCTGGTCCAGTTAAGGGTGGAACAATTGTTATTGCCTATGTGGAGGATCCTGATGGTTACACTTTTGAGCTCGTCCAAAGAGCTTCAACCCCTGAGCCACTCTGTCAAGTAATGCTTCACGCTTTGGGCATGAAGGTGGTAAATGTTTATAGACCTGACAATCAGTACGATATAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGATATATAAACATGGTGTCACTGAATACACCAAGGGAAATGGCTATGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGTGCTGAGATAGTGAACATAGTCACACAAGAGCTAGGAGGGACAATTACTCGGCAACCAGGGCCAATTCCTGGCATTAACACAAAGATAACTTCTTTCTTAGATCCAGATGGGTGGAAAATTGTAAGATTAGTTTCTTCTTGTTAA | 1287 | 0.4336 | MAEAAQSNAELLEWPKKDRRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLVEDIRAKGGNITREPGPVKGGTSVIAFVKDPDGYAFELIQRASTPEPLCQVMLRALGLKLVKKVDRPEHKYTIAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNIVTQELGGKITWQPGPIPGLNTKITSFLDPDGWKTVYKLVEDIRAKGGNITREPGPVKGGTIVIAYVEDPDGYTFELVQRASTPEPLCQVMLHALGMKVVNVYRPDNQYDIAMLGYAEEHETTVLELIYKHGVTEYTKGNGYAQVAIGTDDVYKSAEIVNIVTQELGGTITRQPGPIPGINTKITSFLDPDGWKIVRLVSSC. | 429 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g04656 | 428 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 261 | 303 | IPR004360 | - | |
| Seca5g04656 | 428 | Pfam | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | 23 | 142 | IPR004360 | - | |
| Seca5g04656 | 428 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 320 | 421 | IPR029068 | - | |
| Seca5g04656 | 428 | ProSitePatterns | Glyoxalase I signature 2. | 88 | 100 | IPR018146 | GO:0004462|GO:0046872 | |
| Seca5g04656 | 428 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 262 | 308 | IPR029068 | - | |
| Seca5g04656 | 428 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 137 | 306 | IPR037523 | - | |
| Seca5g04656 | 428 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 20 | 148 | IPR029068 | - | |
| Seca5g04656 | 428 | Gene3D | - | 1 | 146 | IPR029068 | - | |
| Seca5g04656 | 428 | Gene3D | - | 264 | 307 | IPR029068 | - | |
| Seca5g04656 | 428 | Gene3D | - | 157 | 263 | IPR029068 | - | |
| Seca5g04656 | 428 | Gene3D | - | 319 | 426 | IPR029068 | - | |
| Seca5g04656 | 428 | SUPERFAMILY | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 158 | 260 | IPR029068 | - | |
| Seca5g04656 | 428 | PANTHER | LACTOYLGLUTATHIONE LYASE | 4 | 263 | - | - | |
| Seca5g04656 | 428 | ProSiteProfiles | Vicinal oxygen chelate (VOC) domain profile. | 21 | 145 | IPR037523 | - | |
| Seca5g04656 | 428 | NCBIfam | lactoylglutathione lyase | 22 | 147 | IPR004361 | GO:0004462|GO:0046872 | |
| Seca5g04656 | 428 | FunFam | Lactoylglutathione lyase | 18 | 152 | - | - | |
| Seca5g04656 | 428 | CDD | GlxI_Ni | 23 | 143 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g04656 | Seca-Chr5 | 103835129 | 103841980 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g04656 | 145 | 265 | Calmodulin-binding Proteins | AT1G08110 | 27.891 | 6.82e-07 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g04656 | K01759 | - | gmx:100794901 | 505.368 |