Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04650 ATGAGGGTTCAACCTGAAACCTCTCTCAAATTGTCCCCAACTCCAACTCCAACTCTGTCTTCTTCCTCTGCTTCTTCTCTTATTAGCAGTGTTGTTGATAATAACAATAATCCTTCTGGGTTGAGATCAACCACTCGCCGGCGTTCCCGTTCTCATCATCAGCCTCAAGAGCTAAGCCTGAAGATAACGCCAATGGTTAGACCTTATGTTCGATCAAAAATGCCTCGCCTTCGTTGGACACCAGATCTCCACCGTTGCTTCGTGCATGCAGTTCAGAGGCTTGGAGGAGAAGACAGGGCCACACCAAAGTTAGTTTTACAGCTAATGAATGTAAAGGGGCTCACCATATCTCATGTTAAAAGCCACCTTCAGATGTACAGGAGCATGAAGCACGAGCAGATGAGTCAAGAAGCAAAGAAGAATGATATGGCACCAGAATTGTTAACTTCCTCATTCTCCTCAACCTTTGGACCAAGCAACGGTCAACAGAATCGTCCCCAAAGGAGCTGCGGAACTCATTATACTGAAGAGCTTTCTCGCACCCAAGCTCAATGGAGTCCTTATCATGAGCAGGAGAGTTACGATGGAAAGCAGGGGAGTGAATCGATTATCATGTGCAACAGCGATGAACAAAAGATACACACCTACATCATCTTCCAGGATCTTCTCAGAAGCCAGACTGTCCAAGAGAACAAAAATCCTCCTGAAAAGTTGTCACTAGCTGGGGCTGCTGATTATAATAGCGACCATCAAAGATTCCAAGATTTAACCCCCATAGGAGAGAGGGTGGATGAAGACATAATGTCCCTGTCAATGAGCTCAACAGGTTCACTTCCATTCTTCAATCCGACCCACCCAAGTCCAGATTCAAATGATGTCTCTCTTGAGCTCACCCTCGCTTAA 903 0.4574 MRVQPETSLKLSPTPTPTLSSSSASSLISSVVDNNNNPSGLRSTTRRRSRSHHQPQELSLKITPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMKHEQMSQEAKKNDMAPELLTSSFSSTFGPSNGQQNRPQRSCGTHYTEELSRTQAQWSPYHEQESYDGKQGSESIIMCNSDEQKIHTYIIFQDLLRSQTVQENKNPPEKLSLAGAADYNSDHQRFQDLTPIGERVDEDIMSLSMSSTGSLPFFNPTHPSPDSNDVSLELTLA. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04650 300 MobiDBLite consensus disorder prediction 149 176 - -
Seca5g04650 300 SUPERFAMILY Homeodomain-like 73 129 IPR009057 -
Seca5g04650 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 129 IPR006447 GO:0003677
Seca5g04650 300 MobiDBLite consensus disorder prediction 279 300 - -
Seca5g04650 300 Pfam Myb-like DNA-binding domain 77 127 IPR001005 -
Seca5g04650 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 131 IPR017930 -
Seca5g04650 300 MobiDBLite consensus disorder prediction 181 200 - -
Seca5g04650 300 Gene3D - 74 132 - -
Seca5g04650 300 MobiDBLite consensus disorder prediction 1 44 - -
Seca5g04650 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 49 174 IPR046955 GO:0003700
Seca5g04650 300 FunFam Myb family transcription factor 73 131 - -
Seca5g04650 300 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04650 Seca-Chr5 103790502 103794842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04650 61 132 G2-like Transcription Factor Family AT2G42660 76.389 2.34e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca5g04650 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04650 - - pvu:PHAVU_006G149000g 325.479