Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04644 ATGGAGGACTGGACTAGGGGCCGCACTCTTGGCCGGGGATCCACCGCCGCCGTCTACATCGCCGAGAATCGCCGGTCCGGTCAAGTGTTTGCCGTGAAATCTTCAGAGCTTCATCACTCTGAATTCCTCAAGAGGGAGCAGGGGATTCTCTCCACATTGAAGTGTCCTCAAATTGTGGCTTACCATGGTTGTGACGTCACGTTTGAGAATGGTGCTTACTGGTTCAACTTGTTCATGGAGTACGCACCTCACGGGACGCTCGCAGATGCAGTTCGCGAGCACAATGGTGGAATGGAAGAAACCATGGTTGGTTCCTACGCGCGCCAAATTCTTCTCGGGCTCAACTACCTTCACTCCAATGAGATAGTGCATTGCGACGTGAAGGGACAGAACGTGTTGGTAACGGAGCAGGGTGCCAAAATTGCTGACTTGGGTTGCGCTCGGAGGGTCGGGGATTCGACGGTGATCGCCGGAACGCCGGTGTTCATGGCACCAGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTGTAGGATGTACCGTGCTGGAGATGATCACCGGAAAGCCGCCGTGGCGTGGGGTTTCTGATCCGGCGGCGGCGATGTATAGGATTGGGTTCTCCGACGAGGTGCCGGAGATTCCGAGCTCTGTTTCGGAGCAGGGGAAGGACTTTTTGAGCAAGTGTTTGAAGAGAGACCCCAATGAGAGGTGGTCGGTGGGGGAGCTTCTGGGACACGGATTTGTTGGGGAGTGCAAGGAATCATCAACGTTGGATTCGGACACTCCTACGAGTGTGTTGGAACGAGGTTTTTGGGACTTGTTGGACACAACTCAGGGTCCCACTTCACCTGAACCTGATTATTGTTCCTCGGATTCTTCGAGTCCTAGAGACAGGATTCGTAGGTTGTTTTCGGATGAGCCTGTTTGGGAATGGGACGATGATGATCAATGGGTCACGGTGAGAAGCAATGACAAGGGGTTAGATGCAATGTCAGTTCAGAAAATGGAGGATTGTGGATCAGACACTGTTAGTGACCAGGAGAACAGTTTGGTAGTAACTTTTTATGAACCGAAAATTGTAGTTGCCAATGTAATTGAATTGAGTAGATGGAATGCCATTATTGATGATTGTTACCTTAGCAACAGCAACAGTAGCTGTCGCAATAGAGAATTATTATCAATTTGTCCATGTCGAAAGATTGTTCCCCATGGAAAATTTGATTCTCTCAACAAAGAAATTTTTATCATGCACCGCTTTCTGTTCTCTCTTTCTCTCTTTAATTCCACTTCGGATGAATTGAACGCTTTACAGTTTAAAATTAAAATATTAATTGGATAA 1353 0.4945 MEDWTRGRTLGRGSTAAVYIAENRRSGQVFAVKSSELHHSEFLKREQGILSTLKCPQIVAYHGCDVTFENGAYWFNLFMEYAPHGTLADAVREHNGGMEETMVGSYARQILLGLNYLHSNEIVHCDVKGQNVLVTEQGAKIADLGCARRVGDSTVIAGTPVFMAPEVARGEQQGFPADVWAVGCTVLEMITGKPPWRGVSDPAAAMYRIGFSDEVPEIPSSVSEQGKDFLSKCLKRDPNERWSVGELLGHGFVGECKESSTLDSDTPTSVLERGFWDLLDTTQGPTSPEPDYCSSDSSSPRDRIRRLFSDEPVWEWDDDDQWVTVRSNDKGLDAMSVQKMEDCGSDTVSDQENSLVVTFYEPKIVVANVIELSRWNAIIDDCYLSNSNSSCRNRELLSICPCRKIVPHGKFDSLNKEIFIMHRFLFSLSLFNSTSDELNALQFKIKILIG. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04644 450 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca5g04644 450 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04644 450 SUPERFAMILY Protein kinase-like (PK-like) 1 286 IPR011009 -
Seca5g04644 450 MobiDBLite consensus disorder prediction 279 302 - -
Seca5g04644 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Seca5g04644 450 ProSiteProfiles Protein kinase domain profile. 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04644 450 MobiDBLite consensus disorder prediction 280 295 - -
Seca5g04644 450 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 332 - -
Seca5g04644 450 SMART serkin_6 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04644 450 CDD STKc_MAPKKK 3 253 - -
Seca5g04644 450 Gene3D Transferase(Phosphotransferase) domain 1 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04644 Seca-Chr5 103723843 103725195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04644 2 326 MAP Kinase Kinase Kinase AT5G55090 47.826 1.67e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca5g04644 Pkinase 1.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04644 K20716 - gmx:100802174 538.88