Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04641 GTTGTTTCCGGTTTCATTGTGTTGACGATAGTAGAATCAGTGTGTGGTATATGTCCGAACCTATCCGTGACGCTGCAGTTGATTTCGTCAACCGAAGATCTTCATTGTCGTGATATGCTTGTTGTTAATCAGATGGCAAATTCTGAATTTGAATCAAACATTAACTTGGATGATGATAAGGATCCAGTCTTTGATTATACACCTGAATGTGATCATTTTGTTGGTGGAGATCAAGGTGAAATTGGTGTGGGTCCTAAAAAAGAAGAAAGTGGATTACGGGATGATGAGGCCAATAATTTCTTTGACTACTCTGTGGATGAAATTATGTGTCGTGAGTTTGGTAGTGAAGAAGAGGCATATAATTTCTATAGATTATATGCGAAGTATCATGGCTTTGTGGTGAGGAGAGATGATGTAACGAGGGATATTAGGGGTAATATAATTATGCGGCAGTTTGTTTGCAATAGGGAGGGACTAAGAAATAAGAAGCACTTTATGAGGGTGGATAGGAAGAGAGAGCATAGGCCACTTACCCGTACAAAATGTCCAGCCAAGCTTCGTATACACTACGAGCACAAGAGTTTAAAGTGGATAGTAGTGTCATTTGAGCAGTGTCATAACCATGAGCTGACTCCATGTAGATTTGTGCACCTCCACCCTGGTTACCGTGAGTTAACTGATGCTGATAAGGCGCAGGTTGATTGTTTGTATGGTCATGGTCTCAGAGGTTGTCACATTATGGGATACCTAGTGGCTCAAAAGGGGGGATATCGTCGTGTAGGTTTTACAAAGAAGGACATGTACAACTATCTTGACCGAAAAAATCAAGCAAAGATTAAGAAAGGGGATGAGAAAGATGCAATGGATAGTGTTGAAGCAAATGAAGAGGAAACAAATCTTGATCAGACTATGAGTGATGATAAAAATTCTCAGCAAAGAGATGGGCAGCAAAAACATGTACAATTTGACTGTACAAGGCTTAATGTGGATAAAGCAAAAGACAAAATTAGAAGATTGTCTAAAAAGAAGGAAAAGAGTACGAGTCAAGAAAAGAAAGTAAAACATGCTAAGGAACCGGCAATCAATCCAGGTGGTTGTTATGTTGGAGTAAAAGATGTAAATTCTCAAGTTCCTTCAATGGTTCATCAAGAAAATACTATTAGTCAAGAAAAGAATGCAAATCACGCTAAGGAACCGGCAAACAATTTTATTGGAGGTTCAATTGGAGTAATAGCTGAAAATTCCCAAGTCCCACGTATGGTGTCGCCGATGCCTATGGCCCCGCCAATGAATTTTCCTATTAATGGGTATGGAAGCTTCAGTCAAGGATATCCAATATTACCAAACTTTCATGGTGCTCCCATTCAATCTCAACATACTGGAGTTCCTTTTTATAGTCAAAGTCCCCAGTTTCCTTTCTATCACCAAAATTCTCAACTTTCAATGTATCCACAAGGACCCCAGGTGGAAAGGAAGAAAAACGTTAAGTGA 1491 0.3944 VVSGFIVLTIVESVCGICPNLSVTLQLISSTEDLHCRDMLVVNQMANSEFESNINLDDDKDPVFDYTPECDHFVGGDQGEIGVGPKKEESGLRDDEANNFFDYSVDEIMCREFGSEEEAYNFYRLYAKYHGFVVRRDDVTRDIRGNIIMRQFVCNREGLRNKKHFMRVDRKREHRPLTRTKCPAKLRIHYEHKSLKWIVVSFEQCHNHELTPCRFVHLHPGYRELTDADKAQVDCLYGHGLRGCHIMGYLVAQKGGYRRVGFTKKDMYNYLDRKNQAKIKKGDEKDAMDSVEANEEETNLDQTMSDDKNSQQRDGQQKHVQFDCTRLNVDKAKDKIRRLSKKKEKSTSQEKKVKHAKEPAINPGGCYVGVKDVNSQVPSMVHQENTISQEKNANHAKEPANNFIGGSIGVIAENSQVPRMVSPMPMAPPMNFPINGYGSFSQGYPILPNFHGAPIQSQHTGVPFYSQSPQFPFYHQNSQLSMYPQGPQVERKKNVK. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04641 496 MobiDBLite consensus disorder prediction 280 360 - -
Seca5g04641 496 PANTHER OS01G0519700 PROTEIN 108 289 - -
Seca5g04641 496 Pfam FAR1 DNA-binding domain 121 211 IPR004330 -
Seca5g04641 496 Coils Coil 329 349 - -
Seca5g04641 496 MobiDBLite consensus disorder prediction 324 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04641 Seca-Chr5 103685274 103689859 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g04641 FAR1 1.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04641 - - ccaj:109792835 260.381