Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04637 ATGGCCACTTTAACCACTCTCCTAGTACTCTCATGCTTTCTATCTACCTTAGTTTCAACACTGAAAGCAGAGTCAACAAAATTGCATAACGACCTACCCGACAATGTGGTCATGAACACAATAGACTCGTGCTGGCGAACCAAAACAAATTGGGCTTCAAATCGCCAATCATTGGCAGATTGTGCAATTGGCTTTGGCAATGATGCTATTAGAGGGAAATATGGGGACATATATGAAGTCACTGATCCCTCTGATGACCCTGTAAACCCAAAACCAGGCACACTTCGTTATGGTGTAATTCAAACAGAACCCCTTTGGATAACTTTTGCCAAGGACATGGTTATCACTCTCAAGAACGAGCTTATTATGAATAGCTATAAGACCATTGATGGGAGAGGAGCTAAGGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTCATTATACATGGAATCAGCATTCATGATTGTAAACCAGGTAAGGCTGCAATGGTGAGGAGCACTACTGAACATGTTGGGTATCGTGGAGGCTCTGATGGAGATGCCATTAGCATATTTGCTTCCTCCAATATATGGATTGACCATTGCTTTTTGGCTCGTTGCACTGATGGTCTCATTGATGTTATTCATGCCTCAACTTCTGTCACCATCTCAAACAATTACTTCACCCAGCATGACAAAGTGATGCTGCTAGGACACAGTGATGAATACAGCGCGGATAGAATAATGAAAGTAACAGTAGCTTTTAACCGTTTTGGCAGTGGCCTAATAGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACCGGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGATCCAACAATTTTCAGTGAAGGGAACTACTTTATAGCTTCCAATGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAAGTAGTGAAAAGTGGAATGATTGGAAATGGAGGACTTCTCGGGATGAATTCTTAAACGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGCACCCCATTCTATTCCTCTGCTCAAAACTTTGTCGCGGCAGAGGCATCCATGGTGCCTTTGTTAACTCTCGATGCAGGGCCATTGGATTGTGATGTTAACAAAGCGTGTTAA 1158 0.4326 MATLTTLLVLSCFLSTLVSTLKAESTKLHNDLPDNVVMNTIDSCWRTKTNWASNRQSLADCAIGFGNDAIRGKYGDIYEVTDPSDDPVNPKPGTLRYGVIQTEPLWITFAKDMVITLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKAAMVRSTTEHVGYRGGSDGDAISIFASSNIWIDHCFLARCTDGLIDVIHASTSVTISNNYFTQHDKVMLLGHSDEYSADRIMKVTVAFNRFGSGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSEGNYFIASNDSAAKQVTKRESSEKWNDWKWRTSRDEFLNGAYFVPSGYGSCTPFYSSAQNFVAAEASMVPLLTLDAGPLDCDVNKAC. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04637 385 Gene3D - 38 378 IPR012334 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Seca5g04637 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Seca5g04637 385 SMART amb_all 112 309 IPR002022 -
Seca5g04637 385 Pfam Pectate lyase 119 303 IPR002022 -
Seca5g04637 385 SUPERFAMILY Pectin lyase-like 38 376 IPR011050 -
Seca5g04637 385 PANTHER PECTATE LYASE 18-RELATED 27 383 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04637 Seca-Chr5 103658828 103660461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04637 6 385 Polysaccharide Lyase AT4G22080 67.602 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04637 K01728 - gmx:100803229 664.07