Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04632 ATGTCCCGAGTAAAGAAGAGTACTGCACCAGAAAGAAAAGTTTCACTTTCAGTTGCGCTAGGACAACGGCCAAATCAACATATTGATAACAACAATATAGACAAAATGTCAAGGTTCTCAAGAGATTTTGGAATTTCTAAGAGAAAGGTTCAAGAAATTCATAAACATGATACTACAATATCTCAGTCAATAGGGGAGGGAAACACTATCATATGTTCAAAGAGGGCTACTAAACTCCCATCAAGGAAGGGACATGAGGCAAAGAGGTGTTTAACTACCTCAAACAATAAAAGAAAATTTGAAGATAATATCTTGAATAACAATTTGGAAGAAGATGAGGAGGTTCTTTTTCTTTCAAAGACAGAGTTCAGAAGCAAAGCTAGAAAAATGGATAATATGATGGACACTGAACAAAATTCCAAAATCTGTCATCAGTGCATGAAAAGGGAAAGAGCAGCATTTGTATCCTGTACTAAATGTCTGAAAATGTACTGTTTGCGGTGCATCAAGCAATGGTATCCCAATATGTCAATAGGAGATATTGCAGAGAGGTGCCCCTTTTGCCGTAAAAATTGCAATTGCAATGTTTGTTTGCATTCAAGAGGAACAATTAAGACATCTAACAGGAACATCTCAGATTGTGAAAAAGTTCAGCATCTCCAATATATAATTAACTCACTTCTTCCATTTATGCAACAAATTTGTGAAGAACAGAGTCAAGAGCGAGATATTGAAGCTAAAATACAAGGAAAATCATGTTCTGAGATTGAGATACCACAAACTTCATGTGATGATGATGAGCGTATCTATTGCAGTGACCATTGTGCTACATCAATTATTGACCTTCATAGAAGCTGCCCCAAGTGTTCCTTTGAAATCTGCCTAAGTTGTTGCCAAGAAATACGTAATGGAAGTATTTCACCCCGGTCTGAAATGAAGTTTCAATATGTGTTTAGGGGCTATGATTATATGCATGGTGGTGATCCATTACCAGTGTCTTGTGATGATTTAGGGACTTCAGAGAGTCATGTTGAGTTATCTACCAAATGGAAAGCCAACAGTGATGGAAGTGTTAGGTGTGCTCCAAAAGAATGGGGAGGTTGTGGTGGCTGTGTGTTGGAGCTGAAGTGCATGCTTCCAAATGGGTGGATATCTGACTTGGAAGCCAAAGCTCGTCACATGCAAATTTTTTTTTGCAAAATTGAACAAAAAACACTTCAGAAAGAAGCAGTATCAAGTTGCAATTCTGTGATAAGAGCTGCATTTAGAGATGGCACAAATGATAATAACATATACTATCCAGCATCAAGTGACCTCATAAAAGAAGGGCTATTTCACTTCCAAAAGCATTGGATTAATGGTGAACCAGTTATAGTCCGTGATGTTCTTAAACAAGGGACAGGTCTGAGTTGGGAGCCAATGGTCACCTGGCGAGCATTAAATGAAAAATTGGATTCAGGGATCAGCTCAAATATGTCACAAGTGAAGGCCATTGATTGCCTGACTAGTTGTGAGGTAGAAATCAACACTCTCAAGTTCTTTAAAGGTTATACAGAAGGGAGAACATATAACAATCTGTGGCCAGAGATGCTCAAGCTGAAAGACTGGCCCCCCTCTGACAAGTTTGAAAATCTTTTGCCCCGCCATTGTGATGAGTTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGATCCTAGAGCTGGAATCCTCAACCTTGCTGTAAGGTTGCCAAACCATGTCCTAAAACCTGACTTGGGTCCAAAAACGTATATTGCTTATGGGATTAGAGAAGAACTTGGCAGAGGAGATTCTGTTACAAAACTTCATTGTGATATGGCAGATGCGGTGAATATTTTGACCCATACATATGAGGTGATATTAACTGATGAACAGCACTCTGTTATTCCAAGAGTGAAAAAAGCACACAAGGCCCAAGATGAGAAAGAGCGTGGTGCTCAAGCTATTGTTGCTGAAAGCCTGAATGAAGGACCTTGCAAAGACAAAAGAGAACAGAAAAAAGATAAGAGCTCTATTAAGATCAATGGAAAGATCTTTCCAGATCAAGTTCCCACACTCTCTAAAGAAACAAGAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAACACTCTAAAGAATTTAGACATACTTACTGTTCTCCAGTTGAACAGGTTGTCCATCCAATTCATGACCAATGTTTTTATTTGACTGTGGAGCACAAGAAGAAGCTGAAGGAGGAATATGGTGTAGAACCTTGGACATTTGAGCAGAAACTTGGAGAAGCAGTGTTTATTCCTGCTGGATGCCCTCACCAAGTAAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTTGTGTCCCCAGAAAATGTGCACGTGTGCATGCGTTTAACTGATGAGTTCCGTCGTCTTCCTAAGAATCATAAGGCCAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGACCAAGCTGTCAAAGAATTAGAAGCTGTAGTTAGGTGTTCGTGA 2559 0.3931 MSRVKKSTAPERKVSLSVALGQRPNQHIDNNNIDKMSRFSRDFGISKRKVQEIHKHDTTISQSIGEGNTIICSKRATKLPSRKGHEAKRCLTTSNNKRKFEDNILNNNLEEDEEVLFLSKTEFRSKARKMDNMMDTEQNSKICHQCMKRERAAFVSCTKCLKMYCLRCIKQWYPNMSIGDIAERCPFCRKNCNCNVCLHSRGTIKTSNRNISDCEKVQHLQYIINSLLPFMQQICEEQSQERDIEAKIQGKSCSEIEIPQTSCDDDERIYCSDHCATSIIDLHRSCPKCSFEICLSCCQEIRNGSISPRSEMKFQYVFRGYDYMHGGDPLPVSCDDLGTSESHVELSTKWKANSDGSVRCAPKEWGGCGGCVLELKCMLPNGWISDLEAKARHMQIFFCKIEQKTLQKEAVSSCNSVIRAAFRDGTNDNNIYYPASSDLIKEGLFHFQKHWINGEPVIVRDVLKQGTGLSWEPMVTWRALNEKLDSGISSNMSQVKAIDCLTSCEVEINTLKFFKGYTEGRTYNNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRCLPFQEYSDPRAGILNLAVRLPNHVLKPDLGPKTYIAYGIREELGRGDSVTKLHCDMADAVNILTHTYEVILTDEQHSVIPRVKKAHKAQDEKERGAQAIVAESLNEGPCKDKREQKKDKSSIKINGKIFPDQVPTLSKETRETGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTVEHKKKLKEEYGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHVCMRLTDEFRRLPKNHKAREDKLEIKKMIVYAVDQAVKELEAVVRCS. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04632 852 Gene3D Cupin 434 824 - -
Seca5g04632 852 FunFam Transcription factor jumonji domain-containing protein 428 824 - -
Seca5g04632 852 SMART cupin_9 546 815 IPR003347 -
Seca5g04632 852 MobiDBLite consensus disorder prediction 662 677 - -
Seca5g04632 852 ProSiteProfiles Zinc finger RING-type profile. 143 189 IPR001841 -
Seca5g04632 852 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 63 847 IPR045109 GO:0032454|GO:0033169
Seca5g04632 852 MobiDBLite consensus disorder prediction 642 677 - -
Seca5g04632 852 Pfam JmjC domain, hydroxylase 697 798 IPR003347 -
Seca5g04632 852 SUPERFAMILY Clavaminate synthase-like 446 850 - -
Seca5g04632 852 CDD cupin_RmlC-like 739 787 - -
Seca5g04632 852 ProSiteProfiles JmjC domain profile. 565 815 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04632 Seca-Chr5 103612473 103617784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca5g04632 JmjC 1.9e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04632 K15601 - gmx:100801772 1242.25