Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04631 ATGACCACACAACCAAACAGAAAACCATTGGTTTTGGTTCTAATGTTTATGTTGTTGATAATTAATAGAGCCCAAGGAAGGTGTTGGTCTGGTTGCAACCTTGCTCTAGCTTCCTATTACTTATGGCAAGGCACAAATCTCACATACATTAGCAAGATTTTTGGGAAGCCAACCTCAGAGATTCTGAAATACAACCCAAGTGTGACAAATCCTGATGTGATTCAGAGCGGAACAAGGATCAATGTGCCTTTCTCGTGTGAGTGCCTAAACGGTGAGTTCCTAGGCCACACTTTCTCTTACTTAACCCAACACGGAGACACATACACCAAAATTGCCAAGGTTGATTTCTCAAACCTCACAACGGAGGAGTGGGTGAGAAGGGTCAACAGATATCATCCTAATGAGATACCCGACAACGTCAACATAAATGTCACCATCAACTGCTCCTGCGGAGACAGACACGTGTCCAAGGATTATGGCTTGTTTCTCACCTACCCACTTCGCCCCGGTGACGACTTGCCGCGACTTGCGGCGGATTCCGGCGTGCAGGCGGAGCTGCTGCAGAGGTACAACCCTGCCTCGGATTTCACTGCCGGGAGTGGAATCCTGTTTGTGCCGGCCAAAGATGAAAATGGAAACTTTCCACCACTGCACCTGAGAATAGGAATATCCCGTGGAGTCATTGCTGGCATTGCTGTTGGAGGAGTTGTTGGGATCTTACTGTTGACACTTGCTATATATTTTGGGATATATAGAAGAAAGAAAGTGGATGAGGTAACCCTTCTCCCAGTCCCAGGAGCATCTGAAGATCAGTGTAGTCAACTCCAACACGGTTGTGGAAGCAGCATGGACAAGGCATCAGAATCTTCTATTGTTGCTTCACCAAGGTTGACAGGTATTACAGTGGACAAGTCAGTGGAGTTCTCATATGAGGAGCTTGCCAAAGCTACTGATGGCTTTAGCACTGCTAATATAATTGGTCGAGGTGGATTTGGATCTGTTTACTATGCTGAGCTTAGAAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTTGCTGAACTAAAGGTTCTGACACATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTACATTGAGAACGGCAATTTAAGTCAACATTTGCGTGTCTCAGGGAGGGATCCGTTATCATGGCCAGCTAGAGTTCAAATTGCCCTTGATGCAGCAAGAGGACTAGAATACATCCATGAGCATACAGTTCCTGTCTACATCCATCGAGATATCAAATCAGCAAACATTTTGATAGACAAAAACTTCCGTGGCAAGGTTGCAGATTTTGGTCTGACAAAACTGACTGAATATGGTAGTTCTTCATTACAAACGCGTCTTGTGGGTACATTTGGTTATATGCCTCCAGAATATGCACAATATGGTGAGGTTTCCCCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTTGTATCTGGCAAGGAAGCTATTGTCAAGACAAACGAGCCTGAGAACGAATCAAAAGGATTAGTTGCATTGGTTGTTTTTCCTGGCTATCTTACCTCATTACTAGTTGTAATTCATTTCATTTGTAGTTCTTTACTCAATTTTAGCTTGCTTGAAAAAATGCAGTTTGAGGAAGTTCTTGGTCTGCCAGAACCAAAAGAAGATCTTCATAAACTTGTTGACCCTAGGCTTGGTGAAAACTACCCTCTTGAGTCAATATTTAAGGTGGTTCCTTGTCTTATTAAAATGCAAAACTAG 1818 0.4296 MTTQPNRKPLVLVLMFMLLIINRAQGRCWSGCNLALASYYLWQGTNLTYISKIFGKPTSEILKYNPSVTNPDVIQSGTRINVPFSCECLNGEFLGHTFSYLTQHGDTYTKIAKVDFSNLTTEEWVRRVNRYHPNEIPDNVNINVTINCSCGDRHVSKDYGLFLTYPLRPGDDLPRLAADSGVQAELLQRYNPASDFTAGSGILFVPAKDENGNFPPLHLRIGISRGVIAGIAVGGVVGILLLTLAIYFGIYRRKKVDEVTLLPVPGASEDQCSQLQHGCGSSMDKASESSIVASPRLTGITVDKSVEFSYEELAKATDGFSTANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRVSGRDPLSWPARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELVSGKEAIVKTNEPENESKGLVALVVFPGYLTSLLVVIHFICSSLLNFSLLEKMQFEEVLGLPEPKEDLHKLVDPRLGENYPLESIFKVVPCLIKMQN. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04631 605 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Seca5g04631 605 Gene3D Transferase(Phosphotransferase) domain 1 391 604 - -
Seca5g04631 605 ProSiteProfiles LysM domain profile. 37 82 IPR018392 -
Seca5g04631 605 FunFam LysM receptor kinase 2 299 390 - -
Seca5g04631 605 ProSiteProfiles Protein kinase domain profile. 320 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04631 605 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 597 IPR044812 GO:0019199|GO:0045087
Seca5g04631 605 Pfam Protein tyrosine and serine/threonine kinase 323 517 IPR001245 GO:0004672|GO:0006468
Seca5g04631 605 Gene3D Phosphorylase Kinase; domain 1 301 390 - -
Seca5g04631 605 Pfam LysM domain 47 83 IPR018392 -
Seca5g04631 605 SMART LysM_2 38 83 IPR018392 -
Seca5g04631 605 Gene3D LysM domain 38 88 IPR036779 -
Seca5g04631 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Seca5g04631 605 FunFam PTI1-like tyrosine-protein kinase 3 391 540 - -
Seca5g04631 605 SUPERFAMILY Protein kinase-like (PK-like) 300 570 IPR011009 -
Seca5g04631 605 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04631 Seca-Chr5 103601385 103610269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04631 9 596 Receptor kinase-like Gene Family AT3G21630 51.338 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca5g04631 PK_Tyr_Ser-Thr 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04631 - K13429 gmx:100802308 884.404