Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04626 ATGCTTTTGAGCCCTGCAATCACAATGGCTCATACCCGCTTCCCTTTCTCTCTCTTTCTCGCCGCGTTTGTGCCATTCTATTTGATCTTTGCTGCTATTCCTCTTGTCCTCGCCAACACTGACCCTTCTGATGTTCAAGCTCTTGGGGTCATGTACAATGCGTTAAATAGTTCAACACAGCTAACGGGTTGGAAAATCGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGATAACATGTGAGGGTTCAGCCGTTGTTTCCATTGAACTCTCAGGCTTAGGACTTGATGGGACTCTGGGATACCTGCTTTCAGACCTTATGTCACTGAAAAAGCTTGACTTAAGTGACAACAAGATCCACGATACAATTCCCTACCAGTTGCCACCAAATCTTACTAGCCTAAATCTTGCAAGAAATAACTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGCTTCACTCAATTATCTGAATGTAAGCAACAATGCACTCTCCCAGTCAATTGGCGACATTTTTGCTACTCTTCCGGATCTTGGTACTGTGGATCTATCATTCAATAACTTTTCTGGGGATCTTCCTCCTTCATTTGGTTCACTGTCCAATCTTTCTTCTCTCTTCTTGCAGAAGAACCAGTTGACTGGCTCCCTTGATGTTCTAGCTGGTTTGCCTTTGGATACTTTAAACGTTGCAAACAATAATTTCAGTGGATGGATACCTCATGAGCTTAAATCGATCCATAACTTCATATATGATGGAAATTCTTTTAATGATGGTCCTGCTCCTCCTTCGCCAACATTTACAGCACCTCCACCTAGTGGATCTCATAAAAGCCATCATCATTCTGGGTCTGGTTCACATAATAAAACACAGGGGTCTGATAATGAAAATTCTGATGACCATAAGGGTTTGACAGCAGGGGCCGTTGCAGGCATTATTTTAGGTTCAGTGTTGGTGGCTGTTATTTTGTTACTTGTTCTTGTTTTCTGTATCCGAAAGGTAAAAGGGAAGAAAAAGGGTGCAAGAACTTCTAGTGGGCGCTTTCCTCCTGGAATTACTAATGTAACTCCTCAGATGCAAGAGCAGAGGGTGAAAAGTGCTGCTGTTATTACAGATCTCAAGCCTCATCCTGCAGAAAACGTGACGATTGAGAGGGTACCTGTAAAAAGTGGATCTGTAAAGCAGATGAAGTCCCCTATAACTGCCACATCATACACAGTTGCTTCTCTACAGAGTGCAACAAATAGCTTTAGTCAAGAATATATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACAAGGCTGATTTTCCAAATGGGAAGATAATGGCTGTTAAGAAGATTGACAACTCGGCACTGTCATTACAAGAAGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCTTGCGGCATCCAAACATTGTTACACTGGCTGGCTACTGTGCAGAGCATGGCCAACGGCTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTACTGAAGATAGTAGCAAGGCTTTATCTTGGAATGCTCGTGTACGCATTGCGCTTGGCACAGCTCGAGCTTTAGAGTACTTACATGAAGTGTGCTTGCCTTCTGTTGTTCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAAGAGCTCAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTCTGACACCAAATACTGAACGACAGCAGGTATCAACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCAGGAATATACACCGTAAAAAGCGATGTTTACAGCTTTGGGGTGGTTATGCTGGAGCTATTGACTGGTCGGAAGCCACTTGACAGTTCACGAGTTAGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAGCTTCATGATATAGATGCCTTGGCCAAAATGGTTGATCCTGCTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCTCTCTGTGTTCAGCCTGAACCTGAATTTCGACCCCCCATGTCTGAGGTGGTGCAAGCATTGGTACGGTTAGTGCAAAGAGCAAGTGTGGTTAAAAGGCGACCCAGTGACGAATCTGGTTTTGGTCACAAGACCCCAGATCACGAGGCCATAGACATGTCATTTTAA 2181 0.4324 MLLSPAITMAHTRFPFSLFLAAFVPFYLIFAAIPLVLANTDPSDVQALGVMYNALNSSTQLTGWKIGGDPCGESWKGITCEGSAVVSIELSGLGLDGTLGYLLSDLMSLKKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSISAMASLNYLNVSNNALSQSIGDIFATLPDLGTVDLSFNNFSGDLPPSFGSLSNLSSLFLQKNQLTGSLDVLAGLPLDTLNVANNNFSGWIPHELKSIHNFIYDGNSFNDGPAPPSPTFTAPPPSGSHKSHHHSGSGSHNKTQGSDNENSDDHKGLTAGAVAGIILGSVLVAVILLLVLVFCIRKVKGKKKGARTSSGRFPPGITNVTPQMQEQRVKSAAVITDLKPHPAENVTIERVPVKSGSVKQMKSPITATSYTVASLQSATNSFSQEYIIGEGSLGRVYKADFPNGKIMAVKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLAGYCAEHGQRLLVYEYIGNGNLHDMLHFTEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGHKTPDHEAIDMSF. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04626 726 Gene3D Transferase(Phosphotransferase) domain 1 495 713 - -
Seca5g04626 726 Gene3D Ribonuclease Inhibitor 41 306 IPR032675 -
Seca5g04626 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 696 IPR046959 -
Seca5g04626 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 382 494 - -
Seca5g04626 726 Gene3D Phosphorylase Kinase; domain 1 380 494 - -
Seca5g04626 726 CDD STKc_IRAK 423 695 - -
Seca5g04626 726 MobiDBLite consensus disorder prediction 271 292 - -
Seca5g04626 726 SUPERFAMILY Protein kinase-like (PK-like) 395 692 IPR011009 -
Seca5g04626 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 41 267 - -
Seca5g04626 726 ProSiteProfiles Protein kinase domain profile. 417 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04626 726 SUPERFAMILY L domain-like 40 248 - -
Seca5g04626 726 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Seca5g04626 726 Pfam Protein kinase domain 419 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04626 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 495 706 - -
Seca5g04626 726 MobiDBLite consensus disorder prediction 260 300 - -
Seca5g04626 726 ProSiteProfiles Leucine-rich repeat profile. 108 129 IPR001611 GO:0005515
Seca5g04626 726 Pfam Leucine rich repeat 108 165 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04626 Seca-Chr5 103553075 103559637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04626 152 726 Strubbelig Receptor Gene Family AT4G22130 71.478 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca5g04626 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04626 - - aprc:113869285 1184.86