Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04625 ATGGAGGGTAGTAGTAGTTCTTACTTGATGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCAATGATGATGATGCCTTTAGTGACTTCTAATCATCCCAATAATAATACTAATGCAAACACTAACACTAACACAAACTGTCTCTTCCTTCCCATCCCTTCCACTAATAATAATAATCACCACTCCAACACTGGAGCCCCTCCTTCTATCATGCTTCACAACAACACCACCACCAACCCTGCTGGCTTAGGGTATTATTTCATGGAGGACAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCTTCTGCTGTTAAGGACAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCTGCCTATGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCGAGGTTGGAAGAAGCGTGTGCATCTGCTGTGAGGTTGGCAGGTGATACAGTTGGATCAGGCTGCATAGGTGAAGATCCAGCTTTAGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACTAAGTATGAGCAAGAACTTTCTAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAGAGGATAGAGTGTCAGTTCAAAAATCTCACTATTTCTCCTTCCGATGTTGGAATTGATTCATGTATATATGATGGATCAGGTTGTAATGAGGGTACTGATAAGAATGGATCATCTGAAGAGGATGTTGATCTATACAACATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGGAAGTACAGTGGATACTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTTCCTAAAGAAGCAAGGCAAAAGCTTCTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCGCAGAAGGTGGCTCTGGCAGAGTCGACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATAAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGGTGGATCCAAGCCATCCACACTATTGCATGGATCACAATGTTCTCACCAATCCCTTTCCCATGGATCTCCCCAACACCATGCTCTAG 1110 0.4459 MEGSSSSYLMAFGENSGGLCPMMMMPLVTSNHPNNNTNANTNTNTNCLFLPIPSTNNNNHHSNTGAPPSIMLHNNTTTNPAGLGYYFMEDNNNNNGSSSSSSSAVKDKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVRLAGDTVGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISPSDVGIDSCIYDGSGCNEGTDKNGSSEEDVDLYNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQKLLEWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYCMDHNVLTNPFPMDLPNTML. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04625 369 SUPERFAMILY Homeodomain-like 272 348 IPR009057 -
Seca5g04625 369 Pfam ELK domain 250 271 IPR005539 GO:0003677
Seca5g04625 369 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Seca5g04625 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 339 - -
Seca5g04625 369 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Seca5g04625 369 SMART ELK_2 250 271 IPR005539 GO:0003677
Seca5g04625 369 FunFam Homeobox protein knotted-1-like 2 275 337 - -
Seca5g04625 369 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Seca5g04625 369 Gene3D - 275 337 - -
Seca5g04625 369 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Seca5g04625 369 SMART KNOX2_2 154 205 IPR005541 GO:0003677|GO:0005634
Seca5g04625 369 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Seca5g04625 369 Pfam KNOX1 domain 104 143 IPR005540 GO:0003677|GO:0005634
Seca5g04625 369 SMART HOX_1 272 337 IPR001356 GO:0003677
Seca5g04625 369 Pfam KNOX2 domain 157 204 IPR005541 GO:0003677|GO:0005634
Seca5g04625 369 CDD homeodomain 282 334 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04625 Seca-Chr5 103544144 103549780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04625 105 369 Homeobox Transcription Factor Family AT1G62360 75.836 1.07e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca5g04625 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04625 - - gmx:100805837 550.821