Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04622 ATGAGTCAACTCGGTGTGATATTGCAGGAATCGGTGCGGACACAGAGGGAATCGAGAACGATTCTGGGTTTGTTGAGGGAGCAAATGGACGGTGTAGATGAAGGGTCTCGCAGGAGGCGTAGCTTCAAGGAACGGCTAGGATTCATTGGCATGGGTTGTTGTGGGGCCACCTGGGGTTTCCGTTCCGCTGCTCTAACCGTCAGGAATGGAGAACAACCACAGCAACAACAGCAGCTTCTGGAATCGGAGCCTGGTCAGGATCCGAATGCGTCTGGACCCGGCTGTGTGGGCCCGACTCCGGCGGGTTCGTCGAGCATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGACAACTCCGGGGAACGCCGGAGGAACAAGGTGCGGGAGGTGGCAGAGCGCCGGGGACGCCGTGGAGGGTTTCGTTGATGAGGCTGCTGGAAGAGAAGGAGGGTGGGGACACGGCGGCGGCGGAGGAGGAGAAAGGAGGAGGGACGGTGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGGAGGAATAAAGGGGCAGCATTCATACCATGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGAGGGTCATGTCCCCTTTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 660 0.5864 MSQLGVILQESVRTQRESRTILGLLREQMDGVDEGSRRRRSFKERLGFIGMGCCGATWGFRSAALTVRNGEQPQQQQQLLESEPGQDPNASGPGCVGPTPAGSSSMNLAAALAAERQLRGTPEEQGAGGGRAPGTPWRVSLMRLLEEKEGGDTAAAEEEKGGGTVGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04622 219 PANTHER OS01G0917900 PROTEIN 4 219 - -
Seca5g04622 219 SMART ring_2 171 208 IPR001841 -
Seca5g04622 219 MobiDBLite consensus disorder prediction 69 85 - -
Seca5g04622 219 SUPERFAMILY RING/U-box 166 216 - -
Seca5g04622 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 218 IPR013083 -
Seca5g04622 219 MobiDBLite consensus disorder prediction 69 102 - -
Seca5g04622 219 ProSiteProfiles Zinc finger RING-type profile. 171 209 IPR001841 -
Seca5g04622 219 Pfam Zinc finger, C3HC4 type (RING finger) 168 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04622 Seca-Chr5 103503395 103504054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04622 21 219 C3H Transcription Factor Family AT4G22250 51.675 7.33e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04622 - - gmx:100804959 295.049