Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04619 ATGGGGAAATCGGGGGGTAGAAGAAAGAAGGGTGGCGGTTCAAACGAACCTCCAGTCGAGAATTCAGCAAATAATGGCAGTATGGAATTGGATTCGTCAGCGTCATTGAAGAGAGCCCACGAGCTGAAAGAAGAGGGAAACAGAAGATTCCAGAATAAGGACTATGCGAGTGCTCTTCAACAATACGACAATGCTCTTCGTCTAACCCCCAAAAACCACCCAGACAGGGCCGTGTTTCACAGCAATAAGGCCGCGTGTTTGATGCAAATGAAGCCCATTGATCATGAAACTGTCATTGCCGAATGCACCATGGCGCTTCAGGTCCAGCCCCAATTTGTGCGAGCCCTCCTTCGAAGGGCACGCGCGTACGAGAGCGTAGGCAACAACGAAATGGCGCTGCGAGACGTAAAAGCCTTGTTGGCAGCTGAACCTACTCACTCCGATGCTTTGGAGATTGCTCACAGATTGAGAAGAACCGCATTGGAACCTCGCCCTTCCCCTGCTGCTCTCGGCGTTTCCGCCGTTCGTGGTAACCCTACGTCGGGCTTAGGCCCAGGCCCAAAGAAGGCCCAGCCCGAGACTAAGCCCCAATTGCCAAAGCCCTCAAATGAATCAAGAAAAGAAGAGGTTGAGATTCGGTCTAGGCCGTTGAAGCTTGTTTATGATCATGACATCAGGCTTGCTCAAATGCCAATGAATTGCAGTTTTAGGGCACTGAGAGACACAGTAAGAAAAAAATTCCCATCTTCTAATTCAGTTCTGATAAAGTATAAGGATAATGACGGTGATTTGGTGACTATAACCTCCACTGATGAACTCAGAATGGCTGAGTCTAGTGTCGATACCCTAAGCGATTCAATTGGGATGCTGAGGTTGAATATAGTTGAAGTTGGTCCTGAGCAGGAGCCACCTTTATTGGAAGAACAGGAACAAAATCCTGTTGAGAGTGGTTCTATTTCTAATGATATTGATACCAAGCTTGTTAAGGTGGAGAAAGATACTAAAACTAAGGATGATACTGAATCCAAGGAAATAGAGATGGATGATTGGATGTTTGAATTTGCTCAGCTTTTCCGTTCTCGTGTTGGCATTGATGGGGATGCTCATGTTGACTTGCATGAGCTTGGGGTGGAGTTTTGTTCAGAGGCACTTGAGGAATTGGTTACTGGTGAGGAGGCTCAGGGTCTCTTTGATAAAGCTGCTTTGAAGTTTCAAGAGGTGGCTGCATTGGCATTCTTCAATTGGGGAAATGTGCACATGTGTGCTGCTAGGAAGCGTGTGCCCTTAGAAGGGAAGGAGAAGGAGGTAGTGGCAGGAGGGCTTCAAGTTGCTTTTGATTGGGTTAAGGAAAAATATTGTTTGGCAAGAGAGAAGTATGAGCAAGCTCTCTTGATTAAACCAGACTTTCATGAGGGTTTGTTGGCTTTAGGGCAGCAACAATTTGAATTGGCTAAGCTTCATTGGTCTTTTGTGCTTGCTAAGAAGATAGATTTATCAGGCTGGGATTCTAGTGAGACACTTCAGCTTTTTGACAGTGCAGAGCATAAGATGAAAGCTGCAACTGAGATGTGGGAGAAGCTGGAAGAACAGAGAGTAAATGAGCTTAAGGACCCGAAGAAAGAAGAGCTATTGAGAAGAAAGAAAAAACAGGGAGATGAATCCTCTTGTGTTGGGGGTCAGGATGATGGTGTATCTGCAGAAGAAGCTGCACAGCATGCAGCTGTGATGAGATCGCAGATTCATCTTTTCTGGGGTAATTTGCTGTTTGAACGATCTCAAGTGGAATGCAAATTGGGAATGGCTGATTGGAAGAAAAACCTGGATGCTGCTATTGTGCATTTTAAGCTTGCTGGAGCTTCAGAGGCTGATGTTTCAATGGTTCTAAAGAATCATTGCTCCAATGGAGAAGTAAAAGGATCAAGAACCCACAACACAATTACGCTAGTAAAATAG 1953 0.4557 MGKSGGRRKKGGGSNEPPVENSANNGSMELDSSASLKRAHELKEEGNRRFQNKDYASALQQYDNALRLTPKNHPDRAVFHSNKAACLMQMKPIDHETVIAECTMALQVQPQFVRALLRRARAYESVGNNEMALRDVKALLAAEPTHSDALEIAHRLRRTALEPRPSPAALGVSAVRGNPTSGLGPGPKKAQPETKPQLPKPSNESRKEEVEIRSRPLKLVYDHDIRLAQMPMNCSFRALRDTVRKKFPSSNSVLIKYKDNDGDLVTITSTDELRMAESSVDTLSDSIGMLRLNIVEVGPEQEPPLLEEQEQNPVESGSISNDIDTKLVKVEKDTKTKDDTESKEIEMDDWMFEFAQLFRSRVGIDGDAHVDLHELGVEFCSEALEELVTGEEAQGLFDKAALKFQEVAALAFFNWGNVHMCAARKRVPLEGKEKEVVAGGLQVAFDWVKEKYCLAREKYEQALLIKPDFHEGLLALGQQQFELAKLHWSFVLAKKIDLSGWDSSETLQLFDSAEHKMKAATEMWEKLEEQRVNELKDPKKEELLRRKKKQGDESSCVGGQDDGVSAEEAAQHAAVMRSQIHLFWGNLLFERSQVECKLGMADWKKNLDAAIVHFKLAGASEADVSMVLKNHCSNGEVKGSRTHNTITLVK. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04619 650 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Seca5g04619 650 PANTHER PROTEIN CLMP1 1 638 IPR044517 -
Seca5g04619 650 Pfam PB1 domain 215 296 IPR000270 GO:0005515
Seca5g04619 650 MobiDBLite consensus disorder prediction 161 211 - -
Seca5g04619 650 SUPERFAMILY TPR-like 39 487 IPR011990 GO:0005515
Seca5g04619 650 Coils Coil 510 530 - -
Seca5g04619 650 ProSiteProfiles PB1 domain profile. 214 297 IPR000270 GO:0005515
Seca5g04619 650 Gene3D - 214 292 - -
Seca5g04619 650 MobiDBLite consensus disorder prediction 1 36 - -
Seca5g04619 650 MobiDBLite consensus disorder prediction 542 563 - -
Seca5g04619 650 MobiDBLite consensus disorder prediction 17 32 - -
Seca5g04619 650 Gene3D Tetratricopeptide repeat domain 36 162 IPR011990 GO:0005515
Seca5g04619 650 SMART tpr_5 113 146 IPR019734 GO:0005515
Seca5g04619 650 SMART tpr_5 39 72 IPR019734 GO:0005515
Seca5g04619 650 SMART tpr_5 77 112 IPR019734 GO:0005515
Seca5g04619 650 SMART PB1_new 214 297 IPR000270 GO:0005515
Seca5g04619 650 SUPERFAMILY CAD & PB1 domains 217 293 - -
Seca5g04619 650 CDD PB1 217 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04619 Seca-Chr5 103453949 103455901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04619 27 157 Calmodulin-binding Proteins AT3G25230 26.056 4.55e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04619 K26538 - gmx:100786963 834.713