Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04610 ATGGCGGGATCATGTTTCCACGGGCTTCGCCTGTGGGGATCAAAGAGTAAACCTTTACCATCCCCTCCTTCATCTTCGTCCAAGCCCCGGTTGAATTGTGACATGGAGAGCATGGAAAGGAGGAGATTTGATAGCATGGAATCATGGTCCATGATATTGGACTCTGAGAATATGGAGACATGGGAGGCTTCAAAAGATGAACAGGAGGAATGGACTGCAGACTTATCACAGCTTTTCATAGGCAACAAGTTTGCTTCTGGGGCTCACAGTAGGATTTACCGTGGAATCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAGAATTCCAACCCAGGATGAGGAGAGAAGAGTCTTACTAGAGCAGCAATTCAAGTCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCATAACATAGTGCAGGTGAAGTTCACCCAAATAGAGCTAACTTTGCCAATTGAGCCAGGCTTAATGATTGTTTATGGGTTTTGGGCTTTGATACATTGTCATTTGTCAATGACAAATCTGTAA 531 0.4426 MAGSCFHGLRLWGSKSKPLPSPPSSSSKPRLNCDMESMERRRFDSMESWSMILDSENMETWEASKDEQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRVLLEQQFKSEVALLSRLFHHNIVQVKFTQIELTLPIEPGLMIVYGFWALIHCHLSMTNL. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04610 176 SUPERFAMILY Protein kinase-like (PK-like) 67 146 IPR011009 -
Seca5g04610 176 Gene3D Phosphorylase Kinase; domain 1 64 163 - -
Seca5g04610 176 ProSiteProfiles Protein kinase domain profile. 78 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04610 Seca-Chr5 103395755 103397478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04610 1 141 MAP Kinase Kinase Kinase AT1G62400 74.497 1.03e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca5g04610 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04610 - - gmx:100803225 228.024